Table 2. Summary of the de novo liver transcriptome assembly.
Total Assembled | Above Coverage Threshold1 | ||
Number of Reads | Mapped | 307,105,226 (95.2%) | 306,815,840 (95.1%) |
Unmapped | 15,489,472 (4.8%) | 15,778,858 (4.9%) | |
Total Number of Predicted Transcripts | 174,010 | 169,387 | |
Transcript Length (bp) | Min | 200 | 200 |
Mean | 1,213 | 1,238 | |
Max | 39,213 | 39,213 | |
N50 | 2,038 | 2,052 | |
Total Residues (bp) | 211,012,448 | 209,738,998 | |
Average GC Content/Transcript | 46.9% | 46.9% | |
Transcripts Identified | Turkey | 85,435 (49.1%) | 85,052 (50.2%) |
Chicken | 102,421 (58.9%) | 101,831 (60.1%) | |
Swiss-Prot | 78,167 (44.9%) | 78,009 (46.1%) | |
Total Known | 108,161 (62.2%) | 107,503 (63.5%) | |
Unknown | 65,849 (37.8%) | 61,884 (36.5%) |
Predicted transcripts were filtered according to a coverage threshold of 0.1 read/million mapped.