Skip to main content
. 2014 Jun 20;7:379. doi: 10.1186/1756-0500-7-379

Table 2.

Characteristics of 16 SINE families in the B . rapa and B . oleracea genomes

SINE family No. of SINE members in B. rapa (283 Mb) genome
 No. of SINE members in B. oleracea (385 Mb) genome
 Copies in A. thaliana (119 Mb)
Total Intergenic space a Near gene b Elements in genic regions
 Un mapped d Total Intergenic space a Near gene b Elements in genic regions
5’ UTR c CDS Intron 3’ UTR c 5’ UTR c CDS Intron 3’ UTR c
SB-1
 3
 3
 0
 0
 0
 0
 0
 0
 98
 49
 32
 7
 0
 4
 6
 0
SB-2
 43
 2
 0
 2
 0
 38
 1
 0
 59
 8
 4
 0
 0
 45
 2
 132
SB-3
 134
 70
 36
 6
 0
 12
 6
 4
 278
 156
 80
 20
 0
 9
 13
 4
SB-4
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 38
SB-5
 155
 72
 54
 6
 0
 11
 7
 5
 375
 205
 99
 23
 0
 18
 30
 3
SB-6
 248
 134
 71
 12
 0
 7
 14
 10
 394
 213
 132
 21
 0
 7
 21
 28
SB-7
 372
 202
 106
 17
 0
 11
 20
 16
 355
 197
 119
 16
 0
 2
 21
 3
SB-8
 0
 0
 0
 0
 0
 0
 0
 0
 80
 28
 26
 14
 0
 2
 10
 0
SB-9
 141
 62
 49
 7
 0
 6
 12
 5
 201
 102
 69
 11
 0
 7
 12
 0
SB-10
 16
 5
 10
 0
 0
 0
 0
 1
 134
 67
 48
 7
 0
 6
 6
 0
SB-11
 4
 4
 0
 0
 0
 0
 0
 0
 56
 22
 25
 3
 0
 2
 4
 0
SB-12
 10
 5
 3
 0
 0
 2
 0
 0
 101
 46
 37
 7
 0
 5
 6
 0
SB-13
 1
 0
 1
 0
 0
 0
 0
 0
 95
 43
 30
 7
 0
 7
 8
 0
SB-14
 142
 69
 43
 9
 0
 12
 8
 1
 137
 74
 37
 10
 0
 6
 10
 0
SB-15
 1
 1
 0
 0
 0
 0
 0
 0
 1
 0
 0
 0
 1
 0
 0
 0
SB-16
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 0
 4
Total 1270 629 373 59 0 99 68 42 2364 1210 738 146 1 120 149 212

aMITE members categorized by their insertion >2 kb from the nearest gene.

bMITE members categorized by their insertion 500–2000 bp from the nearest gene.

cMITE members resid in the 500 bp upstream (5’UTR) or downstream (3’UTR) of the start or stop codon, respectively.

dMITE members found in unanchored scaffolds of the B. rapa genome.