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. 2014 Jun 9;6:plu030. doi: 10.1093/aobpla/plu030

Table 1.

Tests for phylogenetic signal for pollination mode and browse type using Fritz and Purvis' D statistic and phylogenetic autocorrelation, respectively. To test for phylogenetic signal for the binary trait pollination mode, we used Fritz and Purvis' D statistic. For this test, significance is assessed by comparing observed trait distributions with expected distributions simulated under a Brownian motion model or by random permutation of the original tip states. For the multistate trait browse type we calculated the maximum parsimony of browse type on our site-specific maximum likelihood tree, and compared the observed value with a null distribution generated by 1000 permutations of the tip states. The Type I error rate (P) value for this test was estimated as the minimum number of simulated trees with parsimony reconstruction of less than or equal to the number of steps in the observed reconstruction. Significant P values (P < 0.05) for both tests indicate that traits are phylogenetically clustered (i.e. not phylogenetically independent).

Parameter Phylogenetic autocorrelation Parameter Fritz and Purvis' D statistic
Character type Categorical (browse type) Character type Binary (pollination mode)
Number of permutations 1000 Number of permutations 1000
Difference in no. of evolutionary steps (MP−mean shuffled) −14.1 D statistic −0.674
95 % confidence interval LCI: 19UCI: 25 Probability of D given Brownian phylogenetic structure 0.144
P value <0.001 Probability of D given random phylogenetic structure <0.001