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. 2004 Apr 15;32(7):2079–2086. doi: 10.1093/nar/gkh532

Table 2. Primers for PCR-derived probes for in situ hybridization.

Probe for Primer pairs Length (bp)
Loop 1 5′-GCCTAAAAAGTGTTTCAATAGAGG-3′ 2019
  3′-AAAGTCGACCTGATGTGAAATCC-5′  
AR 3 5′-AATAATTGGACATTTCTCTCGCTAG-3′ 2334
  3′-ATTTAGAGAGGGAAAGCCTTTCAA-5′  
Loop 3 5′-GGCAGTGCCCTTTGGGTATTTCT-3′ 2749
  3′-CGAGCCTGCCATGAGTTTAAAAT-5′  
AR 4 5′-ATTAATCCTAATGCTACAGCTTCAG-3′ 4125
  3′-AAATGATAGCCCCTGCATAGACAG-5′  
AR 5 5′-TGTGTTTGAATGAAGAGAAAGGCA-3′ 5012
  3′-GGACCATTAATGGGACTTAGAAAT-5′  
AR 7 5′-ACTATAATACCATATAGGCAATGCC-3′ 2118
  3′-GATAAATGAGGGGAATGCTGATTT-5′  
Loop 7 5′-AAAGATGAGCTTTTCCATGCTAGT-3′ 3858
  3′-AGTAGAAAGGTTTATCCCAGGCCA-5′  
AR 8 5′-ATTTGTTAAAAGTTAGCCCCTCCA-3′ 3779
  3′-TTACCAAATCTGTTCCTCTTCCTA-5′  

AR, attachment region.