Table 1.
Classification of genes according to ChIP data and inferred regulatory coupling.
| TF | B- | B+/C+ | B+/C- | Unclassified* |
| Abf1 | 5638 | 138 | 136 | 470 |
| Ace2 | 5843 | 33 | 33 | 473 |
| Arg81 | 5985 | 11 | 10 | 376 |
| Bas1 | 5975 | 28 | 13 | 366 |
| Cad1 | 5854 | 26 | 13 | 489 |
| Dal81 | 5823 | 24 | 16 | 519 |
| Dig1 | 5872 | 20 | 11 | 479 |
| Fhl1 | 5754 | 146 | 37 | 445 |
| Fkh2 | 5261 | 61 | 45 | 1015 |
| Gal4 | 5149 | 20 | 20 | 1193 |
| Gat3 | 5891 | 40 | 29 | 422 |
| Gcn4 | 5919 | 58 | 21 | 384 |
| Hal9 | 5948 | 4 | 13 | 417 |
| Hap4 | 5939 | 47 | 21 | 375 |
| Hir1 | 5963 | 19 | 10 | 390 |
| Hir2 | 5932 | 8 | 13 | 429 |
| Hsf1 | 5929 | 35 | 17 | 401 |
| Leu3 | 5988 | 8 | 13 | 373 |
| Mbp1 | 5641 | 65 | 40 | 636 |
| Mcm1 | 5709 | 42 | 46 | 585 |
| Met31 | 5983 | 15 | 13 | 371 |
| Msn4 | 5952 | 23 | 7 | 400 |
| Mss11 | 4735 | 11 | 9 | 1627 |
| Ndd1 | 5799 | 50 | 42 | 491 |
| Nrg1 | 5912 | 61 | 20 | 389 |
| Rlm1 | 5900 | 13 | 24 | 445 |
| Sig1 | 5683 | 0 | 0 | 699 |
| Sko1 | 5155 | 2 | 0 | 1225 |
| Sok2 | 4881 | 10 | 6 | 1485 |
| Stb1 | 5791 | 13 | 10 | 568 |
| Ste12 | 5725 | 19 | 31 | 607 |
| Sum1 | 5919 | 35 | 26 | 402 |
| Swi4 | 5528 | 75 | 48 | 731 |
| Swi5 | 5358 | 47 | 45 | 932 |
| Thi2 | 5940 | 5 | 1 | 436 |
| Yap1 | 5959 | 28 | 16 | 379 |
| Yap6 | 5924 | 33 | 54 | 371 |
*Genes whose expression level in microarray data or binding P-value in Lee et al. is not available. The number of genes in each of the categories (B-, unbound genes; B+/C+, bound and coupling genes; B+/C-, genes that are bound but do not couple) is shown for each of the 37 transcription factors analyzed. On average, 58% of the significantly bound genes were classified in the B+/C+ group.