Table 1.
V. cholerae isolates analyzed in this study
| |
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|
Presence (1) or absence (0) of virulence genes |
|
|
|
|
Allelic variants of targeted genes in MLST
a
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Strain no. | Aliases | Serogroup | Serotype | ctxAB | tcpA-R1 | tcpA-R2 | Year | Host | Geographic origin | MLST genotype (GT) | cat | dnaE | gyrB | lap | recA | MSP value b | Reference c |
| 080025/EY |
Vib12, F 751 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.48 |
[18,19] |
| 080025/EZ |
Vib13, F 752 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.17 |
[18,19] |
| 080025/FA |
Vib14, F 753 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.46 |
[18,19] |
| 080025/FB |
Vib15, F 754 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.30 |
[18,19] |
| 080025/FC |
Vib16, F 755 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.36 |
[18,19] |
| 080025/FD |
Vib17, F 756 |
O1 |
Ogawa |
1 |
1 |
0 |
1990 |
Water |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.19 |
[18,19] |
| 080025/FE |
Vib18, F 758 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Water |
Spain |
2 |
13 |
0 |
5 |
8 |
12 |
2.38 |
[18,19] |
| 080025/FF |
Vib19, F 759 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Water |
Spain |
2 |
12 |
0 |
5 |
8 |
12 |
2.22 |
[18,19] |
| 080025/FG |
Vib20, F 760 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Water |
Spain |
2 |
12 |
0 |
5 |
8 |
12 |
2.22 |
[18,19] |
| 080025/FH |
Vib21, F 761 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Prawn |
Ecuador |
2 |
12 |
0 |
3 |
9 |
12 |
2.21 |
[18,19] |
| 080025/FI |
Vib22, F 763 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Prawn |
Ecuador |
2 |
13 |
0 |
3 |
9 |
13 |
2.19 |
[18,19] |
| 080025/FJ |
Vib23, F 762 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Prawn |
Ecuador |
2 |
12 |
0 |
3 |
9 |
12 |
2.32 |
[18,19] |
| 080025/FK |
Vib24, F 764 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Prawn |
Ecuador |
2 |
12 |
0 |
3 |
9 |
12 |
2.30 |
[18,19] |
| 080025/FL |
Vib25, F 766 |
O1 |
Ogawa |
0 |
0 |
0 |
1992 |
Water |
Spain |
3 |
9 |
8 |
11 |
7 |
8 |
2.37 |
[18,19] |
| 080025/FM |
Vib26, F 768 |
O1 |
Ogawa |
1 |
1 |
0 |
1992 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.15 |
[18,19] |
| 080025/FN |
Vib27, F 767 |
O1 |
Ogawa |
1 |
1 |
0 |
1992 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.47 |
[18,19] |
| 080025/FO |
Vib28, F 765 |
O1 |
Inaba |
0 |
0 |
0 |
1991 |
Prawn |
Ecuador |
2 |
13 |
0 |
3 |
9 |
12 |
2.25 |
[18,19] |
| 080025/FP |
Vib29 |
O1 |
Ogawa |
1 |
1 |
0 |
1993 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.18 |
[18] |
| 080025/FQ |
Vib30 |
O1 |
Ogawa |
1 |
1 |
0 |
1993 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.40 |
[18] |
| 080025/FS |
Vib32 |
O1 |
Ogawa |
0 |
0 |
0 |
1994 |
Human |
Spain |
3 |
9 |
0 |
11 |
7 |
8 |
2.17 |
[18] |
| 080025/FT |
Vib33 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.22 |
[18] |
| 080025/FU |
Vib34 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.37 |
[18] |
| 080025/FV |
Vib35 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.50 |
[18] |
| 080025/FW |
Vib36 |
O1 |
Ogawa |
1 |
1 |
0 |
1995 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.37 |
[18] |
| 080025/FX |
Vib37 |
O1 |
Ogawa |
1 |
1 |
0 |
1995 |
Human |
Spain |
1 |
1 |
1 |
1 |
1 |
1 |
2.48 |
[18] |
| 080025/GD |
Vib43 |
O1 |
Ogawa |
1 |
1 |
0 |
|
unknown |
unknown |
1 |
2 |
1 |
1 |
1 |
2 |
2.37 |
[18] |
| 080025/GE |
Vib44 |
O1 |
Inaba |
0 |
0 |
1 |
|
unknown |
unknown |
3 |
9 |
0 |
11 |
7 |
0 |
2.45 |
[18] |
| FFIVC057 |
2/23 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Epidemic |
Italy |
1 |
1 |
1 |
1 |
1 |
1 |
2.50 |
[20] |
| FFIVC058 |
2/26 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Epidemic |
Italy |
1 |
1 |
1 |
1 |
1 |
1 |
2.46 |
[20] |
| FFIVC065 |
2/70 |
O1 |
Ogawa |
1 |
1 |
0 |
1994 |
Epidemic |
Albania |
1 |
1 |
1 |
1 |
1 |
1 |
2.51 |
[20] |
| FFIVC129 |
ATCC 33655 |
O1 |
Hikojima |
1 |
0 |
1 |
1979 |
unknown |
unknown |
1 |
2 |
1 |
1 |
1 |
2 |
1.99 |
[20] |
| FFIVC016 |
|
O1 |
Ogawa |
1 |
0 |
1 |
|
unknown |
unknown |
1 |
2 |
1 |
1 |
1 |
2 |
2.39 |
[20] |
| 14/2002/S |
|
O1 |
Unknown |
1 |
1 |
0 |
|
unknown |
unknown |
1 |
1 |
1 |
1 |
0 |
1 |
2.42 |
[20] |
| FFIVC130 |
ATCC51394 |
O139 |
|
1 |
1 |
0 |
1995 |
Human |
India |
1 |
1 |
1 |
1 |
1 |
1 |
2.37 |
[20] |
| FFIVC131 |
CDC2412-93 |
O139 |
|
1 |
1 |
0 |
1995 |
Human |
USA |
1 |
1 |
1 |
1 |
1 |
1 |
2.43 |
[20] |
| FFIVC133 |
|
O139 |
|
1 |
1 |
0 |
2003 |
unknown |
unknown |
1 |
1 |
1 |
1 |
1 |
1 |
2.49 |
[20] |
| 080025/FR |
Vib31 |
O141 |
|
1 |
1 |
1 |
1993 |
Human |
Spain |
singleton |
8 |
7 |
3 |
2 |
9 |
2.24 |
[18] |
| FFIVC050 |
|
non O1/O139 |
|
0 |
0 |
0 |
|
Mussels |
Norway |
singleton |
8 |
9 |
9 |
11 |
5 |
2.28 |
[20] |
| FFIVC084 |
|
non O1/O139 |
|
0 |
0 |
0 |
2003 |
Mussels |
Norway |
singleton |
4 |
2 |
4 |
3 |
3 |
2.45 |
[20] |
| FFIVC114 |
|
non O1/O139 |
|
0 |
0 |
0 |
2004 |
Water |
Norway |
4 |
6 |
1 |
6 |
6 |
6 |
2.29 |
[20] |
| FFIVC115 |
|
non O1/O139 |
|
0 |
0 |
0 |
2004 |
Water |
Norway |
4 |
6 |
1 |
6 |
6 |
6 |
2.39 |
[20] |
| FFIVC137 |
|
non O1/O139 |
|
0 |
0 |
0 |
|
Human |
Norway |
singleton |
7 |
5 |
8 |
10 |
4 |
2.41 |
[20] |
| 2/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
1998 |
Water |
Poland |
5 |
10 |
4 |
2 |
12 |
4 |
2.25 |
[18] |
| 3/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
1998 |
Water |
Poland |
5 |
10 |
4 |
2 |
12 |
4 |
2.42 |
[18] |
| 4/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
2004 |
Water |
Poland |
singleton |
11 |
0 |
13 |
0 |
11 |
2.38 |
[18] |
| 14/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
1998 |
Water |
Poland |
singleton |
5 |
3 |
10 |
4 |
7 |
2.37 |
[18] |
| 17/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
1998 |
Water |
Poland |
6 |
3 |
6 |
7 |
5 |
10 |
2.47 |
[18] |
| 22/110/2006 |
|
non O1/O139 |
|
0 |
0 |
0 |
2004 |
Water |
Poland |
6 |
3 |
6 |
7 |
5 |
10 |
2.26 |
[18] |
| 070256/J | V. mimicus ATCC 33655 | - | 1 | 0 | 0 | 10 | 14 | 10 | 12 | 1 | 14 | 1.71 | [18] | ||||
a“0” means no PCR product was obtained.
bMSP value: highest logarithmic value of the four generated MS-spectra score value compared to Biotyper reference library.
cReference(s), in which the isolate is described previously.