Table 2. Splice site prediction software output.
DESCRIPTION | ACCEPTOR/DONOR | EXON/INTRON | SPLICE SITE SEQUENCE | HSF | SP | ASSP | ||
CONSENSUS VALUE | SCORE | SCORE | SCORE | CONFIDENCE | ||||
Constitutive | DONOR | EXON 5 | CAGgtagac | 77.32 | 6.89 | 0.48639 | 6.866 | 0.864 |
Cryptic | DONOR | EXON 5 | CAGgtgtt | 66.35 | 2.28 | 0.25713 | 7.430 | 0.512 |
Constitutive | ACCEPTOR | INTRON 5 | cctcccagGCG | 73.83 | 5.05 | 0.55301 | 7.595 | 0.822 |
Mutated | ACCEPTOR | INTRON 5 | ctcctcccaaGCG | 93.55 | 2.71 | –0.43946 | 3.443 | 0.486 |
Cryptic | ACCEPTOR | INTRON 5 | gccaagGCA | 72.00 | 2.53 | –2.14118 | –1.914 | 0.941 |
The scores of the preprocessing models reflect the splice site strength. Abbreviations: HSF (Human Splice Finder), SP (Splice Port) and ASSP (Alternative Splice Site Predictor).