Table 2. Diversity Estimates in the MW and MD Accessions Computed Considering the Polymorphic Contigs in the Entire Mesoamerican Sample (26,141 Contigs) and Loss of Nucleotide Diversity Estimates.

Diversity Estimate	MW		MD
N	10		8
S	153,971		56,053
S1	5.9		2.1
He	0.57		0.25
nH	3.5		1.8
π	2.11		0.85
θ	2.08		0.83
ΔH		0.56
ΔH1		0.56
Lπ		0.60
Lπ1		0.58
Lθ		0.60
Lθ1		0.58
ϕST		0.15

N, sample size; S, total number of segregating sites; S¹, mean number of segregating sites per contig; He, average expected heterozygosity (Nei, 1978); nH, mean number of haplotypes per contig; π, θ, averaged estimates of nucleotide diversity (Tajima, 1983; Watterson, 1975; respectively); ΔH, L_π, and L_θ, loss of nucleotide diversity, from averaged He, π, and θ, for (MW – MD) comparison; ΔH¹, L_π¹, and L_θ1, loss of nucleotide diversity, from averaged ΔH, L_π, and L_θ of each contig, for (MW – MD) comparison; averaged ϕ_ST.