Table 1. Number of animals positive for each Epsilonproteobacteria taxon per reptilian (sub)order.
Lacertilia (n = 163) | Serpentes (n = 100) | Testudines (n = 154) | Total (n = 417) | |||||
Animals (%) | Animals (%) | Animals (%) | Animals (%) | |||||
PCR | Culturing | PCR | Culturing | PCR | Culturing | PCR | Culturing | |
Arcobacter genus | 23 (14.1) | 6 (3.7) | 13 (13.0) | 2 (2.0) | 47 (30.5) | 25 (16.2) | 83 (19.9) | 33 (7.9) |
Arcobacter butzleri | 6 (3.7) | 2 (2.0) | 11 (7.1) | 19 (4.6) | ||||
Arcobacter cryaerophilus | 1 (0.6) | 0 (0.0) | 9 (5.8) | 10 (2.4) | ||||
Arcobacter skirrowii | 0 (0.0) | 0 (0.0) | 14 (9.1) | 14 (3.4) | ||||
Campylobacter genus | 62 (38.0) | 18 (11.0) | 32 (32.0) | 3 (3.0) | 93 (60.4) | 39 (25.3) | 187 (44.8) | 60 (14.4) |
Campylobacter fetus taxon 1* | 9 (5.5) | 3 (3.0) | 11 (7.1) | 23 (5.5) | ||||
Campylobacter fetus taxon 2* | 0 (0.0) | 0 (0.0) | 1 (0.6) | 1 (0.2) | ||||
Campylobacter hyointestinalis | 0 (0.0) | 0 (0.0) | 9 (5.8) | 9 (2.2) | ||||
Campylobacter taxon 1* | 10 (6.1) | 0 (0.0) | 24 (15.6) | 34 (8.2) | ||||
Campylobacter taxon 2* | 0 (0.0) | 0 (0.0) | 1 (0.6) | 1 (0.2) | ||||
Helicobacter genus | 50 (30.7) | 12 (7.4) | 26 (26.0) | 0 (0.0) | 87 (56.5) | 8 (5.2) | 163 (39.1) | 20 (4.8) |
Helicobacter taxon 1* | 1 (0.6) | 0 (0.0) | 0 (0.0) | 1 (0.2) | ||||
Helicobacter taxon 2* | 0 (0.0) | 0 (0.0) | 8 (5.2) | 8 (1.9) | ||||
Helicobacter taxon 3* | 4 (2.5) | 0 (0.0) | 0 (0.0) | 4 (1.0) | ||||
Helicobacter taxon 4* | 1 (0.6) | 0 (0.0) | 0 (0.0) | 1 (0.2) | ||||
Helicobacter taxon 5* | 1 (0.6) | 0 (0.0) | 0 (0.0) | 1 (0.2) | ||||
Helicobacter taxon 6* | 1 (0.6) | 0 (0.0) | 0 (0.0) | 1 (0.2) | ||||
Helicobacter taxon 7* | 4 (2.5) | 0 (0.0) | 0 (0.0) | 4 (1.0) | ||||
Sulfurospirillum taxon* | 0 (0.0) | 0 (0.0) | 1 (0.6) | 1 (0.2) | ||||
Total ** | 104 (63.8) | 32 (19.6) | 58 (58.0) | 3 (3.0) | 127 (82.5) | 57 (37.0) | 289 (69.3) | 92 (22.1) |
n, total of sampled animals;
*, putative novel species or subspecies based on 16S rRNA sequence and AFLP fingerprint;
**, not sum of Epsilonproteobacteria positive animals in case of multiple Epsilonproteobacteria taxa per animal.