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. 2014 Jul 2;9(7):e97282. doi: 10.1371/journal.pone.0097282

Table 1. Overview of the 1000 Genomes project samples typed for HLA genes.

Code Ancestry Description of 1000 Genomes projects project Samples Size HLA and genomic variants variants
LWK African Luhya from Webuye, Kenya 90 87 97
YRI African Yoruba from Ibadan, Nigeria 90 38 88
ASW American African Ancestry from Southwest, USA 90 53 61
CLM American Colombian from Medellin, Colombia 70 60 60
MXL American Mexican Ancestry from Los Angeles-California, USA 89 55 66
PUR American Puerto Rican, Puerto Rico 70 55 55
CHB East Asian Han Chinese from Beijing, China 90 85 97
CHD East Asian Chinese from Denver-Colorado, USA 90 0 NA
CHS East Asian Han from south, China 100 100 100
JPT East Asian Japanese from Tokyo, Japan 91 80 89
CEU European Northern and Western European from Utah, USA 111 47 87
FIN European Finnish, Finland 100 93 93
GBR European British from England and Scotland, UK 96 89 89
TSI European Italian from Tuscany, Italy 90 90 98
TOTAL 4 14 1267 932 1080

Ibericos from Spain (n = 14) were genotyped in the KGP but were not available for HLA typing at the time of the project. Chinese Han from Denver were typed for HLA they are currently publically available for sequencing data.

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