Table 1. Overview of the 1000 Genomes project samples typed for HLA genes.
Code | Ancestry | Description of 1000 Genomes projects project Samples | Size | HLA and genomic variants | variants |
LWK | African | Luhya from Webuye, Kenya | 90 | 87 | 97 |
YRI | African | Yoruba from Ibadan, Nigeria | 90 | 38 | 88 |
ASW | American | African Ancestry from Southwest, USA | 90 | 53 | 61 |
CLM | American | Colombian from Medellin, Colombia | 70 | 60 | 60 |
MXL | American | Mexican Ancestry from Los Angeles-California, USA | 89 | 55 | 66 |
PUR | American | Puerto Rican, Puerto Rico | 70 | 55 | 55 |
CHB | East Asian | Han Chinese from Beijing, China | 90 | 85 | 97 |
CHD | East Asian | Chinese from Denver-Colorado, USA | 90 | 0 | NA |
CHS | East Asian | Han from south, China | 100 | 100 | 100 |
JPT | East Asian | Japanese from Tokyo, Japan | 91 | 80 | 89 |
CEU | European | Northern and Western European from Utah, USA | 111 | 47 | 87 |
FIN | European | Finnish, Finland | 100 | 93 | 93 |
GBR | European | British from England and Scotland, UK | 96 | 89 | 89 |
TSI | European | Italian from Tuscany, Italy | 90 | 90 | 98 |
TOTAL | 4 | 14 | 1267 | 932 | 1080 |
Ibericos from Spain (n = 14) were genotyped in the KGP but were not available for HLA typing at the time of the project. Chinese Han from Denver were typed for HLA they are currently publically available for sequencing data.