Table 1. Binding free energiesa of Amoxapine, its metabolites, and Loxapine with bacterial β-glucuronidase.
Ligand | ΔEvdw | ΔEelectrostatic | ΔGgas | ΔGPB | ΔGSA | ΔGsolvent | ΔGelectrostaticb | ΔGnpc | ΔGMMPBSA | Glide scored |
---|---|---|---|---|---|---|---|---|---|---|
AMOX | −42.41 | −7.42 | −49.82 | 23.27 | −2.82 | 20.45 | 15.85 | − 45.23 |
−29.38 | −8.09 |
7-OHAMOX | −39.58 | −7.28 | −46.86 | 25.16 | −2.74 | 22.43 | 17.88 | − 42.32 |
−24.44 | −8.33 |
8-OHAMOX | −38.92 | −13.07 | −51.99 | 34.06 | −3.09 | 30.97 | 20.99 | − 42.01 |
−21.02 | −8.59 |
Loxapine | −45.48 | −9.84 | −55.32 | 47.49 | −3.49 | 44.01 | 37.65 | − 48.97 |
−11.32 | −7.68 |
All the energies are in kcal/mol; Snapshots extracted from the last 2 ns MD simulation were submitted to MMPBSA.py for the free energy calculation.
Total electrostatic contribution: ΔGelectrostatic = ΔEelectrostatic + ΔGPB
Total nonpolar contribution: ΔGnp = ΔEvdw + ΔGSA
Glide docking score for initial poses.