Table 3.
Candidates for hypersensitivity initiation from apoplast proteomics data
| Secreted proteins | Increased in incompatible clones | |||
|---|---|---|---|---|
| Protein ID | Name | 6 h | 24 h | 72 h |
| PGSC0003DMP400015021 | Cellulase containing protein | * | ||
| PGSC0003DMP400051976 | Glucan endo-1,3-beta-D-glucosidase | * | ||
| PGSC0003DMP400012140 | Polyamine oxidase | * | ||
| PGSC0003DMP400056168 | Mitogen-activated protein kinase kinase kinase | * | ||
| Q9LTJ3 | Putative uncharacterized protein At5g59350 | * | ||
| Q9SWI1 | Protein PHYTOCHROME KINASE SUBSTRATE 1 | * | ||
| DES_g15011_t1 | Uncharacterized protein | * | ||
| PGSC0003DMP400011041 | Leucine-rich repeat family protein | * | ||
| PGSC0003DMP400015631 | Aldo-keto reductase family 4 member C10 | * | ||
| PGSC0003DMP400027722 | Bacterial-induced peroxidase | * | ||
| PGSC0003DMP400028029 | Alpha-glucosidase | * | ||
| PGSC0003DMP400030201 | Strictosidine synthase | * | ||
| PGSC0003DMP400046981 | Kunitz trypsin inhibitor | * | ||
| PGSC0003DMP400049292 | Pattern formation protein | * | ||
| PGSC0003DMP400051822 | Actin-101 | * | ||
| PGSC0003DMP400001286 † | Conserved gene of unknown function † | * | ||
| PGSC0003DMP400002450 | Conserved gene of unknown function | * | ||
| PGSC0003DMP400003176 | Zinc finger family protein | * | ||
| PGSC0003DMP400008097 | Rho guanine dissociation inhibitor | * | ||
| PGSC0003DMP400009086 † | PR1 protein † | * | ||
| PGSC0003DMP400035459 | Triacylglycerol lipase | * | ||
| PGSC0003DMP400040683 | ATP binding protein | * | ||
| PGSC0003DMP400045856 | Pentatricopeptide repeat-containing protein | * | ||
| PGSC0003DMP400057833 | Polyprotein protein | * | ||
| Q9FJT0 | Putative uncharacterized protein | * | ||
| Q9LDP1 | F28H19.2 protein (F2J6.15 protein) | * | ||
| Q9LVB8 | Probable carboxylesterase 120 (AtCXE20) (EC 3.1.1.1) | * | ||
| Q9SCZ5 | Putative uncharacterized protein F26O13.180 | * | ||
| PGSC0003DMP400005465 | Osmotin | * | * | |
| PGSC0003DMP400018074 | Phytophthora-inhibited protease 1 | * | * | |
| PGSC0003DMP400021164 | Non-specific lipid-transfer protein | * | * | |
| DES_g20722_t1 | Uncharacterized protein | * | * | |
| O22214 | Putative uncharacterized protein At2g41520 | * | * | |
| O64572 | Expressed protein (Uncharacterized protein) | * | * | |
| PGSC0003DMP400006538 | Aspartic proteinase nepenthesin-1 | * | * | |
| PGSC0003DMP400012829 | Leucine-rich repeat receptor kinase | * | * | |
| PGSC0003DMP400026222 | Cytochrome P450 | * | * | |
| PGSC0003DMP400038388 | Rhicadhesin receptor | * | * | |
| PGSC0003DMP400059150 | Gene of unknown function | * | * | |
| PGSC0003DMP400067598 | O-methyltransferase | * | * | |
| PGSC0003DMP400013560 | Gene of unknown function | * | * | |
| PGSC0003DMP400053911 | Beta-galactosidase | * | * | |
| PGSC0003DMP400012597 | Epidermis-specific secreted glycoprotein EP1 | * | * | |
| PGSC0003DMP400016025 | Pentatricopeptide repeat-containing protein | * | * | |
| PGSC0003DMP400006168 | Glycosyl hydrolase family | * | * | * |
| PGSC0003DMP400017287 † | Cytochrome P450 hydroxylase † | * | * | * |
| PGSC0003DMP400035498 † | Peroxidase † | * | * | * |
| PGSC0003DMP400064458 | Gag-pol protein | * | * | * |
| Q9FKV2 | Berberine bridge enzyme (FAD-binding and BBE domain-containing protein) | * | * | * |
Proteins with increased abundance in the secretome for the two incompatible clones Sarpo Mira and SW93-1015, but not for compatible Desirée. Proteins with a minimum 4-fold increase in both Sarpo Mira and SW93-1015 at 6 or 24 hpi and stable or decreased abundance in Desirée at 6 and 24 hpi were selected. Up-regulation is indicated with an asterisk. The symbol † indicates proteins that were not identified using at least one peptide specific for the listed gene. Symbol (*) indicates the time point in which the change was observed.