Table 2.
SNPs measured by the Sty microarray using PC4 for genotype and PC3 for DNA methylation.
| Rank | SNPs | |||
|---|---|---|---|---|
| 50 | SNP_A-2176803 SNP_A-2114077 |
SNP_A-4286712 SNP_A-4277414 |
SNP_A-4276813 | SNP_A-2134351 |
| 100 | SNP_A-4252327 | SNP_A-4271493 | SNP_A-4261117 | SNP_A-1955805 |
| 150 | SNP_A-2278684 | SNP_A-2159288 | SNP_A-1798268 | |
| 200 | SNP_A-1975466 | |||
| 250 | SNP_A-2221439 SNP_A-2198500 |
SNP_A-2175811 | SNP_A-4259136 | SNP_A-2186260 |
| 300 | SNP_A-4247667 | SNP_A-4296608 | SNP_A-4302067 | |
The 22 selected SNPs (probes) that exhibited significant difference between blood, and normal and tumor tissues, within the top N (= 50, 100, 150, 200, 250, and 300) outliers for both DNA methylation and genotype. Top 300 outliers are shown in red in Figures 6b and 6c. For detailed annotations, including associated genes, of the selected SNPs, see Additional file 1 (sheet name Sty1).