Table 2.

Sites in significant LD are more divergent per site than the genomic background

DOI: http://dx.doi.org/10.7554/eLife.02535.016

Mutation type	Median divergence genomic background	Median divergence stringent	Median divergence relaxed
All sites	0.0040	0.0045 (p<0.001)	0.0044 (p<0.001)
Nonsynonymous	0.00040	0.00065 (p=0.001)	0.00040 (p=0.6)
Synonymous	0.0040	0.0048 (p<0.001)	0.0045 (p=0.004)

Results shown here are limited to regions that had conspecific associations in both populations (stringent dataset: 200 regions, relaxed dataset: 414 regions). p-values were determined by resampling the genomic background.