Figure 5. Gene expression and chromatin accessibility.

A. Boxplot of log₂(effect size) of both cis and trans effects for FAIRE (dark grey) and RNA (light grey). B. Barplot of the percentage of genes with significant cis effects in RNA that are downstream of NFRs with and without cis effects (left). Barplot of the percentage of genes with significant trans effects in RNA that are downstream of NFRs with and without trans effects (right). C. Scatterplot of the log₂(absolute value of the difference in chromatin accessibility between the two species) vs log₂(absolute value of the difference in expression between the two species. The red dot indicates data from the MET10 gene, whose FAIRE-Seq and RNA data are shown in panel D. For clarity, the FAIRE-Seq data is only shown in a 100 bp window on either side of the NFR. FAIRE signal is shown in black, and RNA signal is shown in grey.