Table 2.
Distribution of Maize memory-type genes according to GO functions
|
[ +/+ ] |
[ -/- ] |
[ +/- ] |
[ -/+ ] |
[ +/= ] |
[ -/= ] |
||
|---|---|---|---|---|---|---|---|
| 162 | 72 | 533 | 49 | 941 | 305 | ||
|
Membrane-associated
a
|
42 (26%)b |
16 (22%) |
163 (31%) |
18 (37%) |
264 (28%) |
86 (28%) |
|
| [19%] |
[23%] |
[29%] |
[28%] |
[28%] |
[23%] |
||
|
Chloroplast |
8 (5%) |
4 (6%) |
23 (4%) |
3 (6%) |
41 (4%) |
15 (5%) |
|
| [3%] |
[24%] |
[2%] |
[5%] |
[2%] |
[8%] |
||
|
Thylakoid membrane |
2 (1%) |
2 (3%) |
12 (2%) |
1 (2%) |
12 (1%) |
6 (2%) |
|
| [0%] |
[17%] |
[0.7%] |
[2%] |
[0%] |
[7%] |
||
|
RESP. Aba/Salt/Cold/Heat |
47 (29%) |
3 (4%) |
86 (16%) |
4 (8%) |
171 (18%) |
22 (7%) |
|
| [21%] |
[10%] |
[25%] |
[10%] |
[20%] |
[7%] |
||
|
Response to light |
13 (8%) |
2 (3%) |
37 (7%) |
1 (2%) |
43 (5%) |
14 (5%) |
|
| [5%] |
[8%] |
[3%] |
[6%] |
[3%] |
[4%] |
||
|
Response to JA |
10 (6%) |
1 (1%) |
37 (7%) |
- |
32 (3%) |
6 (2%) |
|
| [2%] |
[5%] |
[14%] |
[2%] |
[4%] |
[2%] |
||
|
Response to SA |
7 (4%) |
2 (3%) |
11 (2%) |
1 (2%) |
30 (3%) |
10 (3%) |
|
| [1%] |
[2%] |
[5%] |
[3%] |
[3%] |
[1%] |
||
|
Response to Auxin |
2 (1%) |
- |
11 (2%) |
- |
13 (1%) |
2 (0.7%) |
|
| [2%] |
[2%] |
[4%] |
[1%] |
[3%] |
[2%] |
||
|
Response to ethylene |
7 (4%) |
- |
18 (3%) |
1 (2%) |
37 (4%) |
8 (3%) |
|
| [1%] |
[1%] |
[6%] |
[2%] |
[4%] |
[1%] |
||
|
Response to GA |
3 (2%) |
2 (3%) |
6 (1%) |
- |
15 (2%) |
8 (3%) |
|
| |
[1%] |
[2%] |
[1%] |
[1%] |
[0%] |
[0.7%] |
|
|
Lea |
- |
- |
8 (2%) |
- |
10 (1%) |
- |
|
| [3%] |
[ND] |
[0%] |
[0%] |
[0%] |
[0%] |
||
|
Ribosomal and protein synthesis |
- |
- |
2 (0%) |
2 (4%) |
1 (0%) |
5 (2%) |
|
| [0%] |
[10%] |
[0%] |
[ND] |
[0%] |
[5%] |
||
|
Protein degradation |
- |
- |
11 (2%) |
1 (2%) |
23 (2%) |
7 (2%) |
|
| [0%] |
[0%] |
[1%] |
[0%] |
[2%] |
[0%] |
||
|
Transcription factors |
17 (11%) |
7 (10%) |
57 (11%) |
2 (4%) |
92 (10%) |
27 (9%) |
|
| [8] |
[2%] |
[7%] |
[6%] |
[7%] |
[4%] |
||
| AP2/ERF |
|
- |
1 (14%) |
17 (30%) |
- |
17 (19%) |
1 (4%) |
| [17%] |
[17%] |
[22%] |
[8%] |
[12%] |
[10%] |
||
| bHLH |
|
- |
1 (14%) |
8 (14%) |
- |
5 (5%) |
3 (11%) |
| [7%] |
[17%] |
[22%] |
[8%] |
[7%] |
[16%] |
||
| bZIP |
|
3 (18%) |
- |
3 (5%) |
1 (50%) |
10 (11%) |
- |
| [14%] |
[ND] |
[5%] |
[8%] |
[8%] |
[1%] |
||
| HD-like |
|
1 (6%) |
2 (29%) |
3 (5%) |
- |
12 (13%) |
4 (15%) |
| [10%] |
[17%] |
[8%] |
[12%] |
[16%] |
[16%] |
||
| MYB |
|
1 (6%) |
- |
3 (5%) |
1 (50%) |
5 (5%) |
3 (11%) |
| [14%] |
[17%] |
[11%] |
[12%] |
[10%] |
[9%] |
||
| ZF |
|
1 (6%) |
3 (43%) |
4 (7%) |
- |
17 (19%) |
13 (48%) |
| [10%] |
[34%] |
[8%] |
[44%] |
[25%] |
[28%] |
||
| NAC |
|
8 (47%) |
- |
4 (7%) |
- |
9 (10%) |
- |
| [3%] |
[ND] |
[10%] |
[4%] |
[8%] |
[1%] |
||
| GRAS |
|
- |
- |
2 (4%) |
- |
6 (7%) |
1 (4%) |
| [3%] |
[ND] |
[3%] |
[ND] |
[2%] |
[6%] |
||
| HSF |
|
1 (6%) |
- |
- |
- |
2 (2%) |
1 (4%) |
| [3%] |
[ND] |
[4%] |
[ND] |
[2%] |
[ND] |
||
| CCAAT |
|
1 (6%) |
- |
1 (2%) |
- |
- |
- |
| [10%] |
[ND] |
[0%] |
[ND] |
[1%] |
[3%] |
||
| WRKY | 1 (6%) |
- |
8 (14%) |
- |
9 (10%) |
1 (4%) |
|
| [7%] | [ND] | [7%] | [4%] | [9%] | [4%] | ||
a)Membrane-associated include plasma membrane (PM), transmembrane (TM), kinases/receptors/signal transduction, TM transport, porins, and Wall/PM proteins
b)Number of genes and percentages (parentheses) per memory group and function are reported, with a comparison to the percentage of genes found in Arabidopsis thaliana [square brackets]. Only percentages equal or higher than 0.7 are reported, and higher than 1% are rounded to the nearest integer. For the Arabidopsis comparison, 0% means detected but smaller than 0.7%, while ND denotes Not Detected. The specific transcription factor subcategories (AP2/ERF, bZIP, etc.) show percentages based on the overall number of memory genes encoding transcription factors.