. 2014 Jul 3;10(7):e1004244. doi: 10.1371/journal.ppat.1004244

Table 1. Gene copy number variation between the VL and CL isolates.

Chr	Tile Start	Tile End	Tile VL/CL ratio	Gene VL/CL ratio	Gene count	GeneID	Product Names
1	240001	250001	0.88	0.54	1	LdBPK_010790.1	eukaryotic initiation factor 4a, putative
11	500001	510000	2.61	2.94	1	LdBPK_111220.1	ABC transporter-like protein
16	370001	420000	1.90	2.14	9	LdBPK_161030.1	(Hypothetical protein) Repeat cluster
				1.90		LdBPK_161040.1	hypothetical protein
				1.90		LdBPK_161050.1	hypothetical protein
				1.77		LdBPK_161060.1	hypothetical protein
				1.94		LdBPK_161070.1	hypothetical protein
				2.00		LdBPK_161080.1	hypothetical protein
				1.97		LdBPK_161090.1	hypothetical protein
				1.87		LdBPK_161100.1	hypothetical protein
				1.87		LdBPK_161110.1	hypothetical protein
19	560001	570000	0.55	0.49	2	LdBPK_191310.1	glycerol uptake protein, putative
				0.56		LdBPK_191320.1	glycerol uptake protein, putative
20	30001	40000	1.19	2.53	1	LdBPK_200120.1	phosphoglycerate kinase B, cytosolic
22	300738	322483	NA	1.83		LdBPK_220670.1	A2 and A2rel repeat cluster^*
23	80001	100000	0.46	0.42	5	LdBPK_230250.1	ABC-thiol transporter (MRPA) H-region
				0.43		LdBPK_230260.1	hypothetical protein, conserved
				0.38		LdBPK_230270.1	hypothetical protein, conserved
				0.43		LdBPK_230280.1	terbinafine resistance locus protein (YIP1)
				0.46		LdBPK_230290.1	ABC-thiol transporter (MRPA)
27	1000001	1024085	1.34	NA	4+	Multiple rRNAs	rRNA locus
29	710001	720000	0.55	0.36	2	LdBPK_291620.1	hypothetical protein
				0.35		LdBPK_291630.1	hypothetical protein

* The A2-A2rel multi-gene family coding region was manually examined because this region is incorrectly assembled in the reference L. donovani BPK282A1 genome due to the repetitive sequences in A2 genes.

Chr: Chromosome.