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. 2014 Jul 3;10(7):e1004244. doi: 10.1371/journal.ppat.1004244

Table 1. Gene copy number variation between the VL and CL isolates.

Chr Tile Start Tile End Tile VL/CL ratio Gene VL/CL ratio Gene count GeneID Product Names
1 240001 250001 0.88 0.54 1 LdBPK_010790.1 eukaryotic initiation factor 4a, putative
11 500001 510000 2.61 2.94 1 LdBPK_111220.1 ABC transporter-like protein
16 370001 420000 1.90 2.14 9 LdBPK_161030.1 (Hypothetical protein) Repeat cluster
1.90 LdBPK_161040.1 hypothetical protein
1.90 LdBPK_161050.1 hypothetical protein
1.77 LdBPK_161060.1 hypothetical protein
1.94 LdBPK_161070.1 hypothetical protein
2.00 LdBPK_161080.1 hypothetical protein
1.97 LdBPK_161090.1 hypothetical protein
1.87 LdBPK_161100.1 hypothetical protein
1.87 LdBPK_161110.1 hypothetical protein
19 560001 570000 0.55 0.49 2 LdBPK_191310.1 glycerol uptake protein, putative
0.56 LdBPK_191320.1 glycerol uptake protein, putative
20 30001 40000 1.19 2.53 1 LdBPK_200120.1 phosphoglycerate kinase B, cytosolic
22 300738 322483 NA 1.83 LdBPK_220670.1 A2 and A2rel repeat cluster*
23 80001 100000 0.46 0.42 5 LdBPK_230250.1 ABC-thiol transporter (MRPA) H-region
0.43 LdBPK_230260.1 hypothetical protein, conserved
0.38 LdBPK_230270.1 hypothetical protein, conserved
0.43 LdBPK_230280.1 terbinafine resistance locus protein (YIP1)
0.46 LdBPK_230290.1 ABC-thiol transporter (MRPA)
27 1000001 1024085 1.34 NA 4+ Multiple rRNAs rRNA locus
29 710001 720000 0.55 0.36 2 LdBPK_291620.1 hypothetical protein
0.35 LdBPK_291630.1 hypothetical protein

* The A2-A2rel multi-gene family coding region was manually examined because this region is incorrectly assembled in the reference L. donovani BPK282A1 genome due to the repetitive sequences in A2 genes.

Chr: Chromosome.