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. 2014 Jun 23;7:282. doi: 10.1186/1756-3305-7-282

Table 1.

Definition of transition rates between compartments of the stochastic S-E-I-R model

Event Change in state Transition rate
Transmission from mosquito to human
(Sh,Eh) → (Sh-1, Eh + 1)
aSh(Im/Nh)
Onset of infectiousness in human
(Eh,ID1) → (Eh-1, ID1 + 1)
zeEh
Transition from ID1 to ID2
(ID1,ID2) → (ID1-1, ID2 + 1)
v1ID1
Transition from ID2 to ID3
(ID2,ID3) → (ID2-1, ID3 + 1)
v2ID2
Transition from ID3 to ID4
(ID3,ID4) → (ID3-1, ID4 + 1)
v3ID3
Transition from ID4 to ID5
(ID4,ID5) → (ID4-1, ID5 + 1)
v4ID4
Transition from ID5 to ID6
(ID5,ID6) → (ID5-1, ID6 + 1)
v5ID5
Transition from ID6 to ID7
(ID6,ID7) → (ID6-1, ID7 + 1)
v6ID6
Transition from ID7 to ID8
(ID7,ID8) → (ID7-1, ID8 + 1)
v7ID7
Transition from ID8 to ID9
(ID8,ID9) → (ID8-1, ID9 + 1)
v8ID8
Transition from ID9 to ID10
(ID9,ID10) → (ID9-1, ID10 + 1)
v9ID9
Recovery in human
(ID10,Rh) → (ID10-1, Rh + 1)
v10ID10
Adult (female) mosquito recruitment
(Sm) → (Sm + 1)
ϵm
Susceptible mosquito death
(Sm) → (Sm-1)
μSm
Transmission from human to mosquito
(Sm,Em) → (Sm-1, Em + 1)
aSm Σi(qiIDi/Nh)
Exposed mosquito death
(Em) → (Em-1)
μEm
Onset of infectiousness in mosquito
(Em,Im) → (Em-1, Im + 1)
bEm
Infectious mosquito death (Im) → (Im-1) μIm

Events and corresponding transition rates in the stochastic SEI10R-SEI model. For each event, we list only those states that change. Variable definitions are given in the Additional file 2 and parameter definitions and values are given in Table 2.