Skip to main content
. 2014 Jun 25;7:39. doi: 10.1186/1755-8794-7-39

Table 5.

Class characterization summary a

Analysis Characterization Description Class 1 Class 2 P-val e
Dura
Biologicalb
Dorso-ventral axis formation
3/3 Up
3/3 Down
0.001
 
 
Pathways in cancer
4/6 Up
4/6 Down
0.031
 
Radiologicalc
Area3
Larger
Smaller
0.006
 
 
Supraoccipital bone
Larger
Smaller
0.006
 
 
Opisthion to reference
Larger
Smaller
0.046
 
Clinical
NA
NA
NA
NA
Blood
Biologicalb
Ribosome
10/10 Up
10/10 Down
2.80E-09
 
 
Spliceosome
5/6 Up
5/6 Down
0.005
 
 
Proteosome
3/3 Up
3/3 Down
0.007
 
 
RNA degradation
2/3 Up
2/3 Down
0.014
 
 
Oxidative phosphorylation
2/4 Up
2/4 Down
0.018
 
Radiologicalc
Boogaard’s angle
Smaller
Larger
0.004
 
 
Basion to reference
Larger
Smaller
0.016
 
 
Tentorium
Smaller
Larger
0.036
  Clinicald Paternal age Younger Older 0.021

aOnly nominally significant results are shown. In addition, only the two most significant clustering analyses were included in the table.

bThe top 100 ranked genes from each analysis were used as input into DAVID v6.7 for the pathway analysis. KEGG pathways with a Fisher exact p < 0.05 are listed. Additional filtering was applied using DAVID's default settings: minimum of 2 genes present in the pathway and an EASE score < 0.1. For each class, the total number of genes present in each pathway and whether they are down- or up-regulated with respect to the other class are noted.

cLogistic regression was carried out including age at MRI, sex, and race as covariates in the model.

dA t-test assuming equal variance was performed.

eThese are not adjusted for multiple testing.