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. Author manuscript; available in PMC: 2015 Jul 15.
Published in final edited form as: J Comput Chem. 2014 May 2;35(19):1411–1417. doi: 10.1002/jcc.23629

Table 1.

Experimental and Computed activation parameters for the systems studied here.

Experimental Valuesa Calculated Values

Classical Quantum-Corrected

Enzyme kH (s-1) ΔG ΔΔGb ΔG ΔΔG ΔG ΔΔG
Wt 220 14.2 0.0 17.8 0 15.5 0.0
G121V 1.4 17.2 3.0 20.2 2.4 18.1 2.6
M42W 5.6 16.4 2.2 19.8 2.0 17.8 2.3
G121V-M42W 0.030 19.5 5.3 21.7 3.9 19.4 3.9
a

Experimental rates are from ref. 10 and corresponding activation energies were calculated with the Eyring equation. We note that ref. 43 demonstrated that the pH-independent rate for the wt is 950 s-1, which may be more relevant to our calculations. Unfortunately, pH independent rates are not available for the mutants, but the effect of the mutations on the rates from ref. 10 is expected to be pH-independent, even if the absolute rates are not pH-independent. All free energies are in kcal/mol.

b

ΔΔG is the difference in free energy barrier vs. the wild-type.