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. 2014 Apr 4;3(3):299–315. doi: 10.1002/mbo3.169

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© 2014 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Comparison between PD and JC samples for key enzymes coding genes of distinct metabolic pathways: Carbon Fixation (abfD, cbbQ, cbbO, cbbX, cbbR), Sulfate Respiration (dsrA), Nitrate Respiration (nirK, nirS, narG, narH, napA, napB, napC, nosZ), Nitrogen Fixation (fixA, fixB, fixC, nifA, nifH), CO Oxidation (coxL, coxM, coxS), Acidity Resistance (idhD, atpA, aldB, cfA, groEL, pstS, phoBDRSU), Virulence and Pathogenicity (katG, aroG, ohr, cpkA, prfA, palFA, sdh1, mpg1, pth11, acr1, ace1, pelA, cut1, pth3, pth8, pkS1-15, tri5, fsr1, magB, mgv1, mps1, pmk1), Chemotaxis and Quorum sensing (pilG, pilH, pilJ), Biofilm (hnsP), and Secretion Systems (TIII Type – escV, pscJ, fliI, flhA/TIV Type – virB4, virB11, cpaF).