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. 2014 Jul 10;15:200. doi: 10.1186/1471-2105-15-200

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Copyright © 2014 Jäger et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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inPHAP phased haplotype view for the 100-kb region on chromosome 2 spanning the genes ALMS1, NAT8 and ALMS1P, after filtering of only those variants with a frequency > 0.5% across the 1096 human individuals of Phase 1 of the 1000 Genomes Project. SNVs that differ from the reference base are colored yellow, while alleles equal to the reference are colored blue. A: Individuals are sorted according to their affiliation with a common population. B: Shows the same visualization as in A, but individuals are aggregated based on their population affiliation, using “maximum” as aggregation method. For abbreviations of the population names see Figure 2.