Table 1. Genetic characterizations of haplotypes of C. andersoni at MS1, MS2, MS3 and MS16 loci.
Haplotype | MS1 | MS2 | MS3 | MS16 | ||||||||||
Accession No.a | Repeatsb | Accession No.a | Repeatb | Polymorphic site | Accession No.a | Repeatsb | Polymorphic site | Accession No.a | Repeatb | |||||
a (n) | b (n) | c (n) | 278 | 489 | d (n) | e (n) | 220 | 473 | f (n) | |||||
A1 | HM565067 | 3 | 14 | HM565078 | 11 | T | G | HM565095 | 2 | 2 | A | C | HM565086 | 14 |
A2 | JF732838 | 3 | 13 | HM565079 | 10 | T | G | HM565097 | 2 | 3 | G | C | JF732872 | 12 |
A3 | JF732836 | 3 | 12 | HM565080 | 10 | C | A | HM565094 | 2 | 3 | G | T | ||
A4 | JF732843 | 3 | 15 | JF732853 | 10 | C | G | HM565096 | 2 | 2 | G | C | ||
A5 | JF732845 | 3 | 16 | JF732851 | 11 | C | G | |||||||
A6 | JF732846 | 3 | 17 |
Accession numbers of all the reference sequences from GenBank.
The small letters a to f in the horizontal subheading represent the repeats at the four loci: a = (TAAAGGGCGAGA); b = (GAACGAGATAGG); c = (CCATACCTC); d = (TGTTGGTGTTGCTGT); e = (TGCTGCAGCTGC); f = (CTTCTTCAT).