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. 2014 Jul 3;95(1):24–38. doi: 10.1016/j.ajhg.2014.05.010

Table 2.

Significant Findings from the Combined Metaregression of Stage 1 and Stage 2 Subgroups

SNP ID Chr Position (in basepairs) Genomic Location Primary Trait Other Trait(s) NS N Ref Freq Ref All p Value Main-Effects-Only Model Metaregression Model with SNP Main Effect and Age Interaction (2 df)
β0 se(β0) β1 se(β1) p Value of Interaction p Value of 2 df Test
At Least Nominal Evidence (p < 0.05) of Interactions

rs880315 1 10,719,453 intron CASZ1 SBP MAP 56 74,498 0.64 T 2.35 × 10−7 0.861 0.353 −0.026 0.007 1.52 × 10−4 1.21 × 10−9
rs6797587 3 48,172,618 near 3′ CDC25A MAP DBPa 87 99,189 0.68 G 4.69 × 10−11 0.748 0.202 −0.008 0.004 0.04 4.36 × 10−11
rs11099098 4 81,388,936 intergenic (PRDM8-FGF5) SBP MAP 81 96,217 0.29 T 2.85 × 10−13 −0.199 0.335 0.016 0.007 0.02 1.56 × 10−13
rs198846 6 26,215,442 downstream HIST1H1T DBP MAPa 87 99,207 0.84 G 1.78 × 10−13 0.088 0.250 −0.011 0.005 0.03 1.48 × 10−13
rs12705390 7 106,198,013 intergenic (CCDC71L-PIK3CG) PP 87 99,094 0.78 G 1.08 × 10−12 0.281 0.264 −0.014 0.005 0.006 2.42 × 10−13
rs7070797 10 63,221,779 intergenic (C10orf107-ARID5B) MAP SBP, DBPa 87 99,189 0.84 G 6.31 × 10−19 0.014 0.282 0.012 0.006 0.02 5.62 × 10−19
rs4601790 11 65,110,482 intron EHBP1L1 MAP DBP 87 99,188 0.27 G 0.001 0.909 0.220 −0.022 0.004 2.90 × 10−7 9.93 × 10−9
rs11072518 15 73,021,663 upstream COX5A MAP SBP, DBP 87 99,189 0.36 T 3.91 × 10−21 0.973 0.192 −0.010 0.004 0.006 1.11 × 10−21
rs17608766 17 42,368,270 intron or UTR 3′ of GOSR2 PP 86 97,437 0.84 T 5.62 × 10−9 0.524 0.322 −0.019 0.006 0.003 4.49 × 10−10

Joint Test Driven by Main Effects Only

rs7537765 1 11,809,890 intron CLCN6 MAP SBPa, DBP 87 99,181 0.16 G 1.66 × 10−19 −0.957 0.249 0.008 0.005 0.12 5.58 × 10−19
rs6707357 2 164,722,539 intergenic (FIGN-GRB14) SBP 87 99,177 0.45 T 1.49 × 10−11 −0.634 0.268 0.004 0.005 0.50 1.03 × 10−10
rs7733138 5 157,807,971 intergenic (nearest gene EBF1) MAP DBPa 87 99,189 0.39 T 6.01 × 10−13 0.006 0.194 −0.007 0.004 0.05 8.75 × 10−13
rs4841569 8 11,489,586 intergenic (BLK-GATA4) SBP MAP 82 97,928 0.57 G 5.56 × 10−10 0.140 0.311 0.008 0.006 0.21 2.03 × 10−9
rs1813353 10 18,747,454 intron CACNB2 MAP SBP, DBP 87 99,189 0.68 T 1.29 × 10−17 0.564 0.202 −0.003 0.004 0.52 1.13 × 10−16
rs11191454 10 104,649,994 intron AS3MT SBP 84 97,234 0.08 G 6.50 × 10−12 −0.320 0.484 −0.011 0.010 0.25 2.98 × 10−11
rs1801253 10 115,795,046 missense ADRB1 MAP SBPa, DBP 82 97,928 0.27 G 7.71 × 10−14 −0.336 0.215 −0.002 0.004 0.71 6.86 × 10−13
rs381815 11 16,858,844 intron PLEKHA7 MAP 87 99,189 0.25 T 3.31 × 10−9 0.028 0.217 0.006 0.004 0.16 9.26 × 10−9
rs2681472 12 88,533,090 intron ATP2B1 SBP DBPa, MAP 87 99,177 0.17 G 4.59 × 10−23 −0.483 0.348 −0.008 0.007 0.24 2.84 × 10−22
rs3184504 12 110,368,991 missense SH2B3 MAP SBP, DBPa 87 99,187 0.48 T 1.17 × 10−21 0.325 0.186 0.003 0.004 0.47 1.09 × 10−20
rs260014 20 57,192,854 upstream ZNF831 MAP SBPa, DBP 82 97,941 0.85 T 1.50 × 10−11 −0.302 0.284 −0.004 0.006 0.49 1.02 × 10−10

Abbreviations are as follows: Chr., chromosome; NS, number of study and age bin subgroups included in the analysis; N, number of participants represented by the analysis; Ref Freq, frequency of the coded allele; Ref All, the coded allele; se, standard error; SBP, systolic blood pressure; DBP, diastolic blood pressure; MAP, mean arterial pressure; PP, pulse pressure. The primary trait had the minimum p value for the joint 2 df test of the index SNP in that locus. The other traits column indicates nonprimary traits significantly associated with SNPs in this locus.

a

The index SNP for this trait differed from the index SNP for the primary trait (see Tables S8, S9, S10, S11, and S12). The p value main effect test was derived from the model containing only the SNP main effect (i.e., test that the intercept is zero). For the model containing the SNP main effect and age interaction, β0 is the theoretical SNP effect on blood pressure (in mmHg) at birth (age = 0) and β1 is the change in the SNP effect on blood pressure (in mmHg) per 1 year increase in age; the estimated SNP effect at a particular age was the addition of the intercept and the product of that age and the coefficient for age. Asterisks () indicate values that achieve genome-wide significance.