Table 2.
SNP ID | Chr | Position (in basepairs) | Genomic Location | Primary Trait | Other Trait(s) | NS | N | Ref Freq | Ref All | p Value Main-Effects-Only Model |
Metaregression Model with SNP Main Effect and Age Interaction (2 df) |
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
β0 | se(β0) | β1 | se(β1) | p Value of Interaction | p Value of 2 df Test | |||||||||||
At Least Nominal Evidence (p < 0.05) of Interactions | ||||||||||||||||
rs880315 | 1 | 10,719,453 | intron CASZ1 | SBP | MAP | 56 | 74,498 | 0.64 | T | 2.35 × 10−7 | 0.861 | 0.353 | −0.026 | 0.007 | 1.52 × 10−4 | 1.21 × 10−9∗ |
rs6797587 | 3 | 48,172,618 | near 3′ CDC25A | MAP | DBPa | 87 | 99,189 | 0.68 | G | 4.69 × 10−11∗ | 0.748 | 0.202 | −0.008 | 0.004 | 0.04 | 4.36 × 10−11∗ |
rs11099098 | 4 | 81,388,936 | intergenic (PRDM8-FGF5) | SBP | MAP | 81 | 96,217 | 0.29 | T | 2.85 × 10−13∗ | −0.199 | 0.335 | 0.016 | 0.007 | 0.02 | 1.56 × 10−13∗ |
rs198846 | 6 | 26,215,442 | downstream HIST1H1T | DBP | MAPa | 87 | 99,207 | 0.84 | G | 1.78 × 10−13∗ | 0.088 | 0.250 | −0.011 | 0.005 | 0.03 | 1.48 × 10−13∗ |
rs12705390 | 7 | 106,198,013 | intergenic (CCDC71L-PIK3CG) | PP | 87 | 99,094 | 0.78 | G | 1.08 × 10−12∗ | 0.281 | 0.264 | −0.014 | 0.005 | 0.006 | 2.42 × 10−13∗ | |
rs7070797 | 10 | 63,221,779 | intergenic (C10orf107-ARID5B) | MAP | SBP, DBPa | 87 | 99,189 | 0.84 | G | 6.31 × 10−19∗ | 0.014 | 0.282 | 0.012 | 0.006 | 0.02 | 5.62 × 10−19∗ |
rs4601790 | 11 | 65,110,482 | intron EHBP1L1 | MAP | DBP | 87 | 99,188 | 0.27 | G | 0.001 | 0.909 | 0.220 | −0.022 | 0.004 | 2.90 × 10−7 | 9.93 × 10−9∗ |
rs11072518 | 15 | 73,021,663 | upstream COX5A | MAP | SBP, DBP | 87 | 99,189 | 0.36 | T | 3.91 × 10−21∗ | 0.973 | 0.192 | −0.010 | 0.004 | 0.006 | 1.11 × 10−21∗ |
rs17608766 | 17 | 42,368,270 | intron or UTR 3′ of GOSR2 | PP | 86 | 97,437 | 0.84 | T | 5.62 × 10−9∗ | 0.524 | 0.322 | −0.019 | 0.006 | 0.003 | 4.49 × 10−10∗ | |
Joint Test Driven by Main Effects Only | ||||||||||||||||
rs7537765 | 1 | 11,809,890 | intron CLCN6 | MAP | SBPa, DBP | 87 | 99,181 | 0.16 | G | 1.66 × 10−19∗ | −0.957 | 0.249 | 0.008 | 0.005 | 0.12 | 5.58 × 10−19∗ |
rs6707357 | 2 | 164,722,539 | intergenic (FIGN-GRB14) | SBP | 87 | 99,177 | 0.45 | T | 1.49 × 10−11∗ | −0.634 | 0.268 | 0.004 | 0.005 | 0.50 | 1.03 × 10−10∗ | |
rs7733138 | 5 | 157,807,971 | intergenic (nearest gene EBF1) | MAP | DBPa | 87 | 99,189 | 0.39 | T | 6.01 × 10−13∗ | 0.006 | 0.194 | −0.007 | 0.004 | 0.05 | 8.75 × 10−13∗ |
rs4841569 | 8 | 11,489,586 | intergenic (BLK-GATA4) | SBP | MAP | 82 | 97,928 | 0.57 | G | 5.56 × 10−10∗ | 0.140 | 0.311 | 0.008 | 0.006 | 0.21 | 2.03 × 10−9∗ |
rs1813353 | 10 | 18,747,454 | intron CACNB2 | MAP | SBP, DBP | 87 | 99,189 | 0.68 | T | 1.29 × 10−17∗ | 0.564 | 0.202 | −0.003 | 0.004 | 0.52 | 1.13 × 10−16∗ |
rs11191454 | 10 | 104,649,994 | intron AS3MT | SBP | 84 | 97,234 | 0.08 | G | 6.50 × 10−12∗ | −0.320 | 0.484 | −0.011 | 0.010 | 0.25 | 2.98 × 10−11∗ | |
rs1801253 | 10 | 115,795,046 | missense ADRB1 | MAP | SBPa, DBP | 82 | 97,928 | 0.27 | G | 7.71 × 10−14∗ | −0.336 | 0.215 | −0.002 | 0.004 | 0.71 | 6.86 × 10−13∗ |
rs381815 | 11 | 16,858,844 | intron PLEKHA7 | MAP | 87 | 99,189 | 0.25 | T | 3.31 × 10−9∗ | 0.028 | 0.217 | 0.006 | 0.004 | 0.16 | 9.26 × 10−9∗ | |
rs2681472 | 12 | 88,533,090 | intron ATP2B1 | SBP | DBPa, MAP | 87 | 99,177 | 0.17 | G | 4.59 × 10−23∗ | −0.483 | 0.348 | −0.008 | 0.007 | 0.24 | 2.84 × 10−22∗ |
rs3184504 | 12 | 110,368,991 | missense SH2B3 | MAP | SBP, DBPa | 87 | 99,187 | 0.48 | T | 1.17 × 10−21∗ | 0.325 | 0.186 | 0.003 | 0.004 | 0.47 | 1.09 × 10−20∗ |
rs260014 | 20 | 57,192,854 | upstream ZNF831 | MAP | SBPa, DBP | 82 | 97,941 | 0.85 | T | 1.50 × 10−11∗ | −0.302 | 0.284 | −0.004 | 0.006 | 0.49 | 1.02 × 10−10∗ |
Abbreviations are as follows: Chr., chromosome; NS, number of study and age bin subgroups included in the analysis; N, number of participants represented by the analysis; Ref Freq, frequency of the coded allele; Ref All, the coded allele; se, standard error; SBP, systolic blood pressure; DBP, diastolic blood pressure; MAP, mean arterial pressure; PP, pulse pressure. The primary trait had the minimum p value for the joint 2 df test of the index SNP in that locus. The other traits column indicates nonprimary traits significantly associated with SNPs in this locus.
The index SNP for this trait differed from the index SNP for the primary trait (see Tables S8, S9, S10, S11, and S12). The p value main effect test was derived from the model containing only the SNP main effect (i.e., test that the intercept is zero). For the model containing the SNP main effect and age interaction, β0 is the theoretical SNP effect on blood pressure (in mmHg) at birth (age = 0) and β1 is the change in the SNP effect on blood pressure (in mmHg) per 1 year increase in age; the estimated SNP effect at a particular age was the addition of the intercept and the product of that age and the coefficient for age. Asterisks (∗) indicate values that achieve genome-wide significance.