Table 2.

Immunogenic proteins identified in neu-transgenic mouse cancer cell lysate. Case-to-control ratios are an average of two analyzed blood draws.

Gene	Description	Subcellular Localization	Case-to-Control Ratios	Q-value (FDR)
				Time Point #1†	Time Point #2‡
Aldoa	Fructose-bisphosphate aldolase A	Cytoplasm	1.25	0.7687	0.0297
Aldoc	Fructose-bisphosphate aldolase C	Cytoplasm	1.25	0.7687	0.0297
Arpc2	Actin-related protein 2/3 complex subunit 2	Cytoplasm	2.69	0.7687	0.0463
Dnajb14	DnaJ homolog subfamily B member 14	Nucleus	1.96	0.7687	0.0297
Eno1	Alpha-enolase	Cytoplasm	1.38	0.7687	0.0238
Hist1h1b	Histone H1.5	Nucleus	2.69	0.7687	0.0463
Hist1h1d	Histone H1.3	Nucleus	2.01	0.3306	0.0118
Hist1h2ba	Histone H2B type 1-A	Nucleus	1.45	0.7398	0.0126
Hist1h2bc	Histone H2B	Nucleus	2.01	0.3306	0.0118
Hnrnpa2b1	Heterogeneous nuclear ribonucleoproteins A2/B1	Nucleus	1.20	0.7687	0.0463
Krt18	Keratin, type I cytoskeletal 18	Cytoplasm	2.51	0.7687	0.0297
Krt7	Keratin, type II cytoskeletal 7	Cytoplasm	2.51	0.7948	0.0297
Krt8	Keratin, type II cytoskeletal 8	Cytoplasm	2.51	0.7948	0.0186
Mdh2	Malate dehydrogenase, mitochondrial	Cytoplasm	1.69	0.7398	0.0126
Nme1	Nucleoside diphosphate kinase A	Nucleus	1.38	0.7687	0.0238
Nme2	Nucleoside diphosphate kinase B	Nucleus	1.20	0.7687	0.0463
Nsfl1c	NSFL1 cofactor p47	Cytoplasm	2.39	0.7398	0.0397
Pdia3	Protein disulfide-isomerase A3	Cytoplasm	2.37	0.7687	0.0278
Pkm2	Pyruvate kinase isozymes M1/M2	Cytoplasm	1.72	0.7687	0.0323
Rbm3	Putative RNA-binding protein 3	Nucleus	1.34	0.7687	0.0297
Serbp1	Plasminogen activator inhibitor 1 RNA-binding protein	Nucleus	2.22	0.3306	0.0118
Sfrs3	Serine/arginine-rich splicing factor 3	Nucleus	4.77	0.3306	0.0118
Sfrs7	Serine/arginine-rich splicing factor 7	Nucleus	2.01	0.7687	0.0444
Ubfd1	Ubiquitin domain-containing protein UBFD1	Unknown	2.02	0.7687	0.0434
Znf518b	Zinc finger protein 518B	Unknown	2.69	0.7687	0.0463

^†q-values based on all 2,808 arrayed fractions

^‡q-values based on 120 fractions significantly elevated (p<0.05) in cases in time point #1