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. 2014 Mar 17;65(13):3609–3621. doi: 10.1093/jxb/eru087

Table 2.

Codon models for ppc-1E1 of Caryophyllales

Model Foreground branches Number of parameters Log- likelihood AIC score
M1aa 399 –49702 10202
M2ab 401 –49702 10206
Ac (a) each C4 and CAM groupsd 401 –49588 99978
Ac (b) a + ppc-1E1c 401 –49523 99848
Ac (c) b + ppc-1E1d + ppc-1E1e 401 –49383 99568
Ac (d) c + ppc-1E1b 401 –49416 99634
Ac (e) d + ppc-1E1a 401 –49556 99914

a Site model without adaptive evolution.

b Site model with adaptive evolution.

c Branch-site model with adaptive evolution.

d Except for Portulacineae other than Portulaca.