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Ancestral reconstruction transition rate matrixLetters A–L refer to the transition rates generated for each ancestral character state reconstruction. Transitions BCF and GJK are not possible under an ordered model; all transitions are possible under an unordered model.
| State 1 | State 2 | State 3 | State 4 | |
|---|---|---|---|---|
| State 1 | – | A | B | C |
| State 2 | D | – | E | F |
| State 3 | G | H | – | I |
| State 4 | J | K | L | – |
