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. 2014 May 22;65(13):3657–3667. doi: 10.1093/jxb/eru193

Table 3.

Transcript abundance of genes related to chloroplast biogenesis and maintenanceReads were mapped onto the latest Arabidopsis thaliana Col-0 genome assembly (gene mapping) or a minimal set of coding sequences of the TAIR 9 genome release (core set mapping) using bowtie. Low: low CO2, 100 ppm; Nor: normal CO2, 380 ppm; rpkm, reads per kilobase per million mapped reads.

Gene ID Protein Gene mapping Core set mapping
Low (rpkm) Nor (rpkm) Fold change Low (rpkm) Nor (rpkm) Fold change
At1g02560 CLPP5 (nuclear-encoded CLP protease 5), protease subunit 177.486 153.738 1.154 203.821 177.293 1.150
At1g06430 FTSH8 (cell-division protease ftsH-8) 46.648 33.676 1.385 53.561 38.836 1.379
At1g09340 CRB (chloroplast RNA binding) 477.334 377.221 1.265 548.065 435.050 1.260
At1g10350 Putative DnaJ heat-shock protein 5.668 8.818 0.643 6.507 10.169 0.640
At1g32080 Putative membrane protein 277.058 238.279 1.163 318.113 274.786 1.158
At1g44446 Chlorophyllide a oxygenase 16.090 45.126 0.357 18.475 52.075 0.355
At1g52290 Protein kinase-like protein 6.746 13.767 0.490
At1g55490 CPN60B (chaperonin 60 beta); RuBisCO large subunit-binding protein subunit beta 294.626 236.862 1.244 346.733 285.802 1.213
At1g62750 SCO1(SNOWY COTYLEDON1); elongation factor EF-G 369.741 244.662 1.511 443.343 295.894 1.498
At1g74730 Unknown protein 233.905 183.326 1.276 268.981 211.675 1.271
At2g03390 uvrB/uvrC motif-containing protein 43.955 31.538 1.394 50.468 36.370 1.388
At2g30950 VAR2 (VARIEGATED 2); cell-division protease ftsH-2 621.194 440.354 1.411 713.485 507.890 1.405
At2g32180 PTAC18 (plastid transcriptionally active 18) 19.442 27.606 0.704 22.323 31.836 0.701
At2g35490 Putative plastid-lipid- associated protein 3 108.463 88.003 1.232 124.626 101.487 1.228
At2g46100 Nuclear transport factor 2 (NTF2) family protein 63.534 49.599 1.281 72.948 57.419 1.270
At3g17040 HCF107 (high chlorophyll fluorescent 107) 9.314 21.102 0.441 10.694 24.335 0.439
At3g19820 DWF1 (DWARF 1) 77.847 87.660 0.888 89.382 101.091 0.884
At3g24430 HCF101 (high chlorophyll fluorescence 101) 65.051 49.942 1.303 74.690 57.594 1.297
At4g24190 SHD (SHEPHERD)/HEAT SHOCK PROTEIN 90–7 73.310 64.708 1.133 84.173 74.623 1.128
At5g12470 Unknown protein 52.805 35.339 1.494 60.629 40.753 1.488
At5g20720 CPN20 (chaperonin 20) 247.229 356.642 0.693 283.940 411.333 0.690
At5g42270 VAR1 (VARIEGATED 1); cell-division protease ftsH-5 413.651 316.477 1.307 475.001 364.966 1.301
At5g52540 Unknown protein 16.931 45.877 0.369 19.307 52.863 0.365