Table 3.
Transcript abundance of genes related to chloroplast biogenesis and maintenanceReads were mapped onto the latest Arabidopsis thaliana Col-0 genome assembly (gene mapping) or a minimal set of coding sequences of the TAIR 9 genome release (core set mapping) using bowtie. Low: low CO2, 100 ppm; Nor: normal CO2, 380 ppm; rpkm, reads per kilobase per million mapped reads.
| Gene ID | Protein | Gene mapping | Core set mapping | ||||
|---|---|---|---|---|---|---|---|
| Low (rpkm) | Nor (rpkm) | Fold change | Low (rpkm) | Nor (rpkm) | Fold change | ||
| At1g02560 | CLPP5 (nuclear-encoded CLP protease 5), protease subunit | 177.486 | 153.738 | 1.154 | 203.821 | 177.293 | 1.150 |
| At1g06430 | FTSH8 (cell-division protease ftsH-8) | 46.648 | 33.676 | 1.385 | 53.561 | 38.836 | 1.379 |
| At1g09340 | CRB (chloroplast RNA binding) | 477.334 | 377.221 | 1.265 | 548.065 | 435.050 | 1.260 |
| At1g10350 | Putative DnaJ heat-shock protein | 5.668 | 8.818 | 0.643 | 6.507 | 10.169 | 0.640 |
| At1g32080 | Putative membrane protein | 277.058 | 238.279 | 1.163 | 318.113 | 274.786 | 1.158 |
| At1g44446 | Chlorophyllide a oxygenase | 16.090 | 45.126 | 0.357 | 18.475 | 52.075 | 0.355 |
| At1g52290 | Protein kinase-like protein | 6.746 | 13.767 | 0.490 | – | – | – |
| At1g55490 | CPN60B (chaperonin 60 beta); RuBisCO large subunit-binding protein subunit beta | 294.626 | 236.862 | 1.244 | 346.733 | 285.802 | 1.213 |
| At1g62750 | SCO1(SNOWY COTYLEDON1); elongation factor EF-G | 369.741 | 244.662 | 1.511 | 443.343 | 295.894 | 1.498 |
| At1g74730 | Unknown protein | 233.905 | 183.326 | 1.276 | 268.981 | 211.675 | 1.271 |
| At2g03390 | uvrB/uvrC motif-containing protein | 43.955 | 31.538 | 1.394 | 50.468 | 36.370 | 1.388 |
| At2g30950 | VAR2 (VARIEGATED 2); cell-division protease ftsH-2 | 621.194 | 440.354 | 1.411 | 713.485 | 507.890 | 1.405 |
| At2g32180 | PTAC18 (plastid transcriptionally active 18) | 19.442 | 27.606 | 0.704 | 22.323 | 31.836 | 0.701 |
| At2g35490 | Putative plastid-lipid- associated protein 3 | 108.463 | 88.003 | 1.232 | 124.626 | 101.487 | 1.228 |
| At2g46100 | Nuclear transport factor 2 (NTF2) family protein | 63.534 | 49.599 | 1.281 | 72.948 | 57.419 | 1.270 |
| At3g17040 | HCF107 (high chlorophyll fluorescent 107) | 9.314 | 21.102 | 0.441 | 10.694 | 24.335 | 0.439 |
| At3g19820 | DWF1 (DWARF 1) | 77.847 | 87.660 | 0.888 | 89.382 | 101.091 | 0.884 |
| At3g24430 | HCF101 (high chlorophyll fluorescence 101) | 65.051 | 49.942 | 1.303 | 74.690 | 57.594 | 1.297 |
| At4g24190 | SHD (SHEPHERD)/HEAT SHOCK PROTEIN 90–7 | 73.310 | 64.708 | 1.133 | 84.173 | 74.623 | 1.128 |
| At5g12470 | Unknown protein | 52.805 | 35.339 | 1.494 | 60.629 | 40.753 | 1.488 |
| At5g20720 | CPN20 (chaperonin 20) | 247.229 | 356.642 | 0.693 | 283.940 | 411.333 | 0.690 |
| At5g42270 | VAR1 (VARIEGATED 1); cell-division protease ftsH-5 | 413.651 | 316.477 | 1.307 | 475.001 | 364.966 | 1.301 |
| At5g52540 | Unknown protein | 16.931 | 45.877 | 0.369 | 19.307 | 52.863 | 0.365 |