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. 2014 May 26;42(Web Server issue):W215–W220. doi: 10.1093/nar/gku460

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Predicted protein–ligand complexes. Query proteins are green cartoon models and invariant binding site residues are CPK-colored stick models (Ligand View 1). (A) Three predicted ion ligand clusters (ions are spheres) on Glyoxalase family protein (PDB ID: 2qqz). (B) Predicted protein ligand (yellow–pink cartoon) on SH2 domain protein (3tkz). (C) Two predicted small molecule ligands, i.e. ATP and an inhibitor of biotin carboxylase (thick CPK sticks) on D-alanine:D-alanine ligase (1iov). (D) Predicted DNA ligand on endonuclease IV protein (4hno).