Table 1.

Prediction of ligands by ProBiS-ligands on 500 test proteins

		Sequence identity cutoff of template proteinsa
		30%	20%	10%
Models	Ligand similarityb	0.55	0.34	0.32
	MCC	0.41	0.13	0.09
	Precision	0.42	0.17	0.14
	Recall	0.45	0.18	0.15
Experimental	Ligand similarityb	0.61	0.46	0.40
	MCC	0.54	0.33	0.28
	Precision	0.56	0.38	0.33
	Recall	0.57	0.36	0.31

^aWe excluded from the template libraries all protein structures with sequence identity >30%, >20% and >10% to the corresponding query proteins.

^bExpressed with Tanimoto coefficient.