Figure 2.

Result page of de novo motif finding. (a) Predicted motifs with nine functional buttons, where i is a searching box showing corresponding job ID, and a user can download the submitted query, control sequences and the predictions by clicking ii, iii and iv, respectively, and the other relevant details can be accessed by clicking button v. vi–viii allow a user to do three follow-up motif analysis functions and ix provides a format conversion capability to inter-convert file formats used in our server, MEME and the Uniprobe database. (b) The locational information of the predicted motif instances of a motif compared to downstream genes. (c) The detailed information of a predicted motif, including consensus, motif counts matrix, PWM, PSSM, information content and this motif in other formats, e.g. MEME and Uniprobe.