Table 1. Nitrated Peptides from the Anti-3-Nitrotyrosine Antibody–Agarose-Immunoprecipitated Brain Proteins^a.

^aHIV, brain samples from individuals with HIV infection without encephalitis; HIV-E, brain samples from individuals with HIV infection and encephalitis; PSM, peptide spectrum match; Hv, heavy chain variable region; and Lv, light chain variable region on immunoglobulins. On the peptide sequences, nitrotyrosines and nitrohydroxytryptophans are shown in red, deamidated residues are indicated in green, carbamidomethylated cysteines are colored green, and the oxidized methionine is shown in purple. The peptide with an asterisk has N-terminus acetylation. The complete peptide identification information can be found in Supporting Information Table 4.