Table 2.
Differentially expressed lnRNA in tongue SCC microarray dataset identified by ncFANs reannotation.
| Vega ID | LNCipedia ID | Locus conservation∗ | Exon number | Transcript size (bp) | Genome location | Expression | P value |
|---|---|---|---|---|---|---|---|
| OTTHUMG00000020778 | lnc-PPP2R4-5 | Zebrafish | 4 | 901 | chr9: 132096185–132109678/+ | Upregulated | 0.007 |
| OTTHUMG00000012449 | lnc-SPRR2D-1 | Mouse | 2 | 1997 | chr1: 152902516–152921686/− | Upregulated | 0.019 |
| OTTHUMG00000012147 | lnc-MAN1A2-1 | Mouse | 3 | 511 | chr1: 117838142–117863958/+ | Upregulated | 0.024 |
| OTTHUMG00000015099 | lnc-FAM46A-1 | Mouse, zebrafish | 2 | 520 | chr6: 82523003–82523874/− | Upregulated | 0.037 |
| OTTHUMT00000048111 | lnc-MBL2-4:1 | Mouse | 4 | 570 | chr10: 54210637–54230293/− | Upregulated | 0.049 |
| OTTHUMT00000048112 | lnc-MBL2-4:3 | Mouse | 3 | 975 | chr10: 54210637–54230293/− | Upregulated | 0.049 |
| OTTHUMG00000002490 | lnc-AL355149.1-1 | No | 2 | 327 | chr1: 16847189–16848303/+ | Downregulated | 0.003 |
| OTTHUMG00000015764 | lnc-STXBP5-1 | Mouse, zebrafish | 2 | 1477 | chr6: 147708800–147711601/+ | Downregulated | 0.006 |
*Locus conservation in Mus musculus and Danio rerio in comparison with Homo sapiens.