Table 4. Database Scan results using various homology detection methods for Target Dataset.

		OCRS		PSI-BLAST		HMMER		HHpred		FASTA search
Fold Class and Title	#Fold	#Hits	EFF	#Hits	EFF	#Hits	EFF	#Hits	EFF	#Hits	EFF
All beta Proteins
GFP-like protein	273	273	100	216	79	228	84	263	96	248	91
Cupredoxin-like proteins	120	117*	98	110	92	108	90	106	88	103	86
Acid Proteases	578	485	84	480	83	462	80	472	82	514	89
Ribosomal Protein L14	291	260	87	123	42	210	72	234	80	221	76
Alpha and beta (α + β) Proteins
β-Grasp (Ubiquitin-like) protein	400	363	90	265	66	156	39	327	82	304	76
Nucleoside Triphosphate Hydrolase	530	492	93	370	70	369	70	508	96	514	97
RNAase A-like proteins	319	312	98	251	79	289	91	310	97	299	94
Cysteine Proteinases	198	170	86	132	66	144	73	164	83	172	87
Alpha and beta (α/β) Proteins
50 S Ribosomal Protein L25	111	111*	100	74	66	74	67	107	96	100	90
50 S Ribosomal Protein L6P	317	282	89	155	49	212	67	264	82	285	90
Difydrofolate reductase-like proteins	272	248	91	216	79	238	88	237	87	242	89
Pyruvate kinase N-terminal domain	65	61	94	46	71	48	74	63	97	60	93

Here, table lists the total number of identified protein homolog during the fold scan against the PDB and the fold detection efficiencies of each method. Here #hits indicates structural fold detected by each method and EFF indicates the fold detection efficiency. Fold detection efficiency is calculated as the ratio of total true positive hits to the total number of structural folds in the PDB.

*Fold detection results for Cupredoxin-like proteins and 50S Ribosomal Protein L25 are obtained using the OCR-fingerprint.