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. 2014 Jul 10;10(7):e1003703. doi: 10.1371/journal.pcbi.1003703

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© 2014 Zare et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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The top table lists, for each of the 17 loci, the inferred clonal genotypes using the EM procedure, assuming C = 3, 4, 5 and 6. In each case, the normal clone (C0) is omitted from the inferred matrix , because its genotype consists entirely of zeroes by construction. For reference, each distinct genotype pattern per locus is assigned a unique color according to the scheme from Figure 6. In the table, bits with asterisks were flipped based on the phylogenetic analysis. The corresponding inferred clonal frequencies are listed in the bottom table, where each block shows a matrix for a value of , and C0 denotes the normal clone.

Inline graphic — The top table lists, for each of the 17 loci, the inferred clonal genotypes using the EM procedure, assuming C = 3, 4, 5 and 6. In each case, the normal clone (C0) is omitted from the inferred matrix , because its genotype consists entirely of zeroes by construction. For reference, each distinct genotype pattern per locus is assigned a unique color according to the scheme from Figure 6. In the table, bits with asterisks were flipped based on the phylogenetic analysis. The corresponding inferred clonal frequencies are listed in the bottom table, where each block shows a matrix for a value of , and C0 denotes the normal clone.