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. 2014 Jul 10;9(7):e101996. doi: 10.1371/journal.pone.0101996

Figure 8. RFA25f_04833 and RFA21d2_02306 are polymorphic in sequence.

Figure 8

(A) Predicted structure of the 348 amino acid FasR sequence. Functional domains are indicated along the top with arrows and barrels representing predicted β-sheets and α-helices, respectively. Boxed region = a region of fasR from D188 that is absent from the reported sequence. Synonymous (red) and non-synonymous substitutions (blue) and INDELs (green arrow heads with number of nucleotide differences indicated) are plotted according to their location in the sequences. Clusters of non-synonymous substitutions in fasR of A21d2 are denoted with, “*”. Substitutions for the other 12 FasR sequences (Other 12) represent the sum total of all sites with substitutions. (B) Sliding-window analysis of synonymous and non-synonymous substitutions in fasR of A21d2 paired with fasR of D188. (C) Sliding-window analysis of codon adaptation index in fasR of A21d2 and D188. The x-axis is based on coordinates of the translated sequence that are aligned to predicted structure shown in panel A.