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. 2014 Jul 10;9(7):e101996. doi: 10.1371/journal.pone.0101996

Table 1. Summary statistics of Rhodococcus draft genome assemblies.

Isolate* Pathogen¥ # usable reads # scaffolds ∼Size (Mb) GC% # CDSs # tRNAs Linear plasmid¥
GIC26 NO 18,924,378 49 5.3 64.45 5022 48 NO
GIC36 NO 18,778,318 46 5.6 64.48 5255 52 NO
05-561-1 NO 19,807,810 30 5.6 64.49 5303 50 NO
LMG3605 YES 19,206,754 27 5.3 64.53 4966 51 YES
D188 YES 65,408,710§ 49 5.4 64.56 5125 51 YES
LMG3602 NO 18,978,318 25 5.4 64.50 5124 50 NO
LMG3616 YES 19,617,964 42 5.8 64.33 5486 51 YES
A3b YES 20,464,110 34 6.0 64.21 5793 51 YES
LMG3623 YES 20,002,692 30 5.8 64.38 5426 48 YES
A78 YES 22,374,616 41 6.0 64.33 5684 50 YES
A21d2 YES 20,072,238 30 6.0 64.10 5626 54 NO
04-516 NO 19,136,324 23 5.8 64.20 5465 52 NO
A25f YES 20,556,130 17 5.9 64.13 5544 50 NO
LMG3625 YES 17,750,698 17 5.9 64.10 5754 56 YES
05-339-1 YES 20,611,418 22 5.7 64.71 5449 54 YES
A76 YES 18,608,398 29 6.0 64.56 5720 53 YES
A44a YES 87,282,290§ 9 5.9 64.47 5584 54 YES
02-815 YES 22,244,434 30 6.2 64.28 5819 55 YES
02-816c YES 23,697,112 45 6.1 64.52 5843 58 YES
A73a YES 23,823,844 23 5.9 64.37 5501 56 YES

*Isolates designated with LMG were obtained from Belgium co-ordinated collection of micro-organisms (BCCM); GIC isolates are from a Greenland glacial ice core; all remaining isolates except D188, were obtained from diseased plants submitted to the Oregon State University (OSU) Plant Clinic. Italicized isolates = first sequenced using a hybrid approach; bold = type strain.

¥

Determined based on leafy gall and root inhibition assays described in a separate study (see associated text for reference).

§

D188 had 65,301,274 PE Illumina reads and 107,436 454 Jr. reads and A44a had 25,093,452 PE Illumina reads and 62,188,838 Illumina mate pair reads from a 3.0 kb library.

Number greater than 1.0 kb in length.