Table 1. Summary statistics of Rhodococcus draft genome assemblies.

Isolate*	Pathogen¥	# usable reads	# scaffolds†	∼Size (Mb)	GC%	# CDSs	# tRNAs	Linear plasmid¥
GIC26	NO	18,924,378	49	5.3	64.45	5022	48	NO
GIC36	NO	18,778,318	46	5.6	64.48	5255	52	NO
05-561-1	NO	19,807,810	30	5.6	64.49	5303	50	NO
LMG3605	YES	19,206,754	27	5.3	64.53	4966	51	YES
D188	YES	65,408,710§	49	5.4	64.56	5125	51	YES
LMG3602	NO	18,978,318	25	5.4	64.50	5124	50	NO
LMG3616	YES	19,617,964	42	5.8	64.33	5486	51	YES
A3b	YES	20,464,110	34	6.0	64.21	5793	51	YES
LMG3623	YES	20,002,692	30	5.8	64.38	5426	48	YES
A78	YES	22,374,616	41	6.0	64.33	5684	50	YES
A21d2	YES	20,072,238	30	6.0	64.10	5626	54	NO
04-516	NO	19,136,324	23	5.8	64.20	5465	52	NO
A25f	YES	20,556,130	17	5.9	64.13	5544	50	NO
LMG3625	YES	17,750,698	17	5.9	64.10	5754	56	YES
05-339-1	YES	20,611,418	22	5.7	64.71	5449	54	YES
A76	YES	18,608,398	29	6.0	64.56	5720	53	YES
A44a	YES	87,282,290§	9	5.9	64.47	5584	54	YES
02-815	YES	22,244,434	30	6.2	64.28	5819	55	YES
02-816c	YES	23,697,112	45	6.1	64.52	5843	58	YES
A73a	YES	23,823,844	23	5.9	64.37	5501	56	YES

*Isolates designated with LMG were obtained from Belgium co-ordinated collection of micro-organisms (BCCM); GIC isolates are from a Greenland glacial ice core; all remaining isolates except D188, were obtained from diseased plants submitted to the Oregon State University (OSU) Plant Clinic. Italicized isolates = first sequenced using a hybrid approach; bold = type strain.

^¥Determined based on leafy gall and root inhibition assays described in a separate study (see associated text for reference).

^§D188 had 65,301,274 PE Illumina reads and 107,436 454 Jr. reads and A44a had 25,093,452 PE Illumina reads and 62,188,838 Illumina mate pair reads from a 3.0 kb library.

^†Number greater than 1.0 kb in length.