Table 2.
Best common population-specific (CPS) SNP-enriched windows for each population
| Population | Chr | Start | End | No. of SNPs | P-value | Gene or flanking genes |
|---|---|---|---|---|---|---|
| YRI | 18 | 6266587 | 6271281 | 26 | 4.36E-66 | L3MBTL4 |
| YRI | 12 | 21347746 | 21353031 | 25 | 9.95E-60 | SLCO1B1 |
| LWK | 10 | 26690276 | 26697294 | 26 | 1.19E-59 | GAD2 - APBB1IP |
| LWK | 3 | 132399187 | 132404788 | 25 | 3.74E-56 | NPHP3-ACAD11 |
| JPT | 2 | 38809530 | 38818371 | 20 | 5.77E-46 | HNRPLL |
| JPT | 4 | 187416152 | 187426671 | 18 | 7.30E-44 | LOC285441-MTNR1A |
| CHINESE | 2 | 152284636 | 152297774 | 12 | 8.13E-36 | RIF1 |
| CHINESE | 11 | 119411414 | 119420288 | 11 | 2.13E-33 | LOC100499227- PVRL1 |
| FIN | 16 | 86084552 | 86093750 | 4 | 2.45E-09 | IRF8-LOC146513 |
| IBS | 3 | 68079 | 77942 | 5 | 6.40E-10 | na-CHL1 |
| IBS | 19 | 52867878 | 52878655 | 4 | 2.77E-08 | ZNF610 |
Population code, genomic coordinates, number of CPS SNPs, p-values and corresponding genes (if window is exonic or intronic) or flanking genes joined by a “-“ (if the window is intergenic), for up to two best 50-SNP windows for each population.
Intergenic window for which no flanking gene was found is indicated by “na”.