Table 4.

Estimates of effective population size (N_e) using different sets of SNP panels that were estimated using r² with the pairs of SNPs that are distanced within 5 Mb

CFAa	Population
	Sap134b		Sap60b		Sap183b
	Ne1c	Ne2c	Ne1c	Ne2c	Ne1c	Ne2c
1	923	1,412	1,055	500	940	1,188
2	1,155	1,864	999	563	1,220	1,184
3	850	1,176	1,008	401	909	822
4	971	1,393	883	379	981	914
5	862	1,486	955	503	818	972
6	801	1,435	1,053	500	760	1,086
7	825	1,458	905	429	971	1,106
8	1,120	1,374	1,021	384	1,660	750
9	886	1,470	1,187	519	837	894
10	6,330	1,624	1,215	594	9,185	1,378
11	2,677	1,990	1,092	603	881	1,561
12	861	1,597	986	647	808	1,148
13	4,693	1,403	1,044	363	827	1,044
14	1,250	1,149	941	520	1,740	833
15	885	1,532	976	420	810	952
16	755	1,745	1,016	764	731	1,289
17	2,229	1,656	1,013	452	768	1,109
18	884	1,587	924	506	823	1,108
19	781	1,514	942	483	821	1,100
20	892	1,218	887	389	872	618
21	839	1,637	1,044	781	833	1,369
22	988	1,667	1,174	387	1,178	1,154
23	801	1,605	1,040	630	794	1,171
24	2,505	1,285	891	425	4,461	806
25	967	1,706	1,208	466	1,311	1,461
26	842	1,285	1,061	460	1,027	930
27	1,666	1,598	951	691	856	1,375
28	859	1,770	883	377	1,585	1,102
29	883	1,645	1,009	471	1,122	1,087
30	1,092	1,473	952	633	1,388	1,201
31	1,160	2,503	946	675	776	1,628
32	7,927	1,736	845	559	1,093	1,275
33	1,022	1,921	1,057	424	929	979
34	773	1,558	1,044	484	955	1,081
35	759	1,551	1,395	738	820	1,302
36	912	2,570	1,377	1,002	775	1,594
37	862	1,170	872	227	908	753
38	975	2,090	1,106	722	976	1,594
Mean	1,486	1,601	1,025	528	1,293	1,129
SDd	1,549	312	127	150	1,453	250

^aCFA = Canine chromosome.

^bThree sets of SNP panels were used with genotyped with the Illumina CanineSNP20K chips (Sap134), CanineHD 170K BeadChip (Sap60), and the combined SNP set of 20K and 170K (Sap183) using 134, 60, and 183 individuals, respectively.

^cEffective population size estimated by a pair-wise method (N_e1) and a non-linear regression method (N_e2).

^dSD = Standard deviation of the N_e estimates across all CFAs.