Table 3.
List of probe information and allele frequencies of 17 polymorphisms on BTA1 and BTA5 genotyped in MCA/MSU and Korean cattle
| Gene | SNP_ID | SNaPshot primer sequences | ‘Allele 1’ | MSU allele 1 frequency | KOR allele 1 frequency |
|---|---|---|---|---|---|
| UPK1B | 209-R | TTCAGTCAGGCTGATGGCC (F) | A | 0.82 | 0.71 |
| UPK1B | 146-S | TGCTTACAGCCTATGCAG (R) | G | 0.79 | 0.33 |
| PARP14 | 251-Y | TGGCAGTGCAGATTGCAGC (R) | C | 0.68 | 0.44 |
| HRG(2) | 251-Y | CTGGGACGACTGTGAGCTG (R) | C | 0.83 | 0.91 |
| HRG(1) | 251-M | GCTCAGTATCCTCAAAGAAAT (F) | A | 0.78 | 0.86 |
| MAGEF1 | 300-K | AGCAGAAACTGCACCAACTC (F) | G | 0.59 | 0.81 |
| ABCD2 | 251-M | TCTGCATTCACTCCAGGTGA (F) | A | 0.59 | 0.74 |
| IL22 | 73-R | CGTTGAGCTTACAGTGCGAC (F) | G | 0.83 | 0.72 |
| SNRPF | 113-M | GGATGAATGGGAAACGCGC (F) | C | 0.52 | 0.50 |
| SNRPF | 138-M | ACCACCAGGCCCGGCAAGT (F) | C | 0.87 | 0.96 |
| SNRPF | 258-S | GCAGGATACTCGCCGCCGA (F) | C | 0.76 | 0.98 |
| AMDHD1 | 304-R | GGAGTTGGACATCGGCATC (F) | G | 0.71 | 0.84 |
| DRAM | 324-Y | CGTTCGTCTGCGGCGTCGT (R) | T | 1 | 0.94 |
| CIQTNF6 | 168-R | TCGCTGTAGACGGCATTATC (R) | G | 0.93 | 0.82 |
| CIQTNF6 | 229-Y | AAGAGCCGTGCCCAGACG (R) | C | 0.65 | 0.56 |
| CIQTNF6 | 251-R | CATCACGCTCTGGCTCTGC (R) | A | 0.83 | 0.56 |
| CIQTNF6 | 282-W | CGCGTACAGGATGACGGC (R) | A | 0.85 | 1 |
MSU = MCA/MSU cattle population (n = 98); KOR = Korean cattle population (n = 323).