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. 2014 Mar;27(3):303–309. doi: 10.5713/ajas.2013.13385

Figure 3.

Figure 3

Example result of linkage disequilibrium around the significant SNPs of eigenvector 1 PCA results on chromosome 2. Linkage disequilibrium (LD) was determined using Haploview, and LD blocks were defined using the Gabriel rule. Darker boxes represent higher LD percentages. Pairwise D’ values (’100) are indicated; blue blocks indicate D’ = 0.