Table 2.
Locus | Primer sequence (5′- 3′) | Chromosome | Allele number | Fluorescent marker | Annealing temperature (°C) | Fragment size |
---|---|---|---|---|---|---|
ILSTS029 | TGTTTTGATGGAACACAGCC TGGATTTAGACCAGGGTTGG |
1 | 9 | NED | 53 | 152–180 |
OarFCB20 | AAATGTGTTTAAGATTCCATACAGTG GGAAAACCCCCATATATACCTATAC |
2 | 11 | 6FAM | 55 | 82–104 |
MAF70 | CACGGAGTCACAAAGAGTCAGACC GCAGGACTCTACGGGGCCTTTGC |
4 | 10 | PET | 60 | 142–184 |
MCM527 | GTCCATTGCCTCAAATCAATTC AAACCACTTGACTACTCCCCAA |
5 | 11 | NED | 58 | 151–173 |
ILSTS087 | AGCAGACATGATGACTCAGC CTGCCTCTTTTCTTGAGAGC |
6 | 11 | PET | 52 | 138–158 |
SPS113 | CCTCCACACAGGCTTCTCTGACTT CCTAACTTGCTTGAGTTATTGCCC |
7 | 9 | PET | 58 | 130–152 |
ILSTS005 | GGAAGCAATGAAATCTATAGCC TGTTCTGTGAGTTTGTAAGC |
7 | 8 | 6FAM | 55 | 181–216 |
ILSTS011 | GCTTGCTACATGGAAAGTGC CTAAAATGCAGAGCCCTACC |
9 | 11 | 6FAM | 58 | 268–282 |
SRCRSP3 | CGGGGATCTGTTCTATGAAC TGATTAGCTGGCTGAATGTCC |
10 | 7 | NED | 55 | 107–123 |
CSRD247 | GGACTTGCCAGAACTCTGCAAT CACTGTGGTTTGTATTAGTCAGG |
14 | 10 | VIC | 58 | 211–246 |
INRA063 | ATTTGCACAAGCTAAATCTAACC AAACCACAGAAATGCTTGGAAG |
14 | 9 | NED | 58 | 165–199 |
MAF065 | AAAGGCCAGAGTATGCAATTAGGAG CCACTCCTCCTGAGAATATAACATG |
15 | 14 | VIC | 55 | 113–147 |
OarFCB48 | GACTCTAGAGGATCGCAAAGAACCAG GAGTTAGTACAAGGATGACAAGAGGCAC |
17 | 7 | 6FAM | 57 | 138–178 |
MAF209 | TCATGCACTTAAGTATGTAGGATGCTG GATCACAAAAAGTTGGATACAACCGTGG |
17 | 8 | VIC | 55 | 87–103 |
BMS1494 | TCTGGAGCTTGCAAAAGACC AATGGATGACTCCTGGATGG |
18 | 7 | 6FAM | 55 | 227–237 |
SRCRSP5 | GGACTCTACCAACTGAGCTACAAG TGAAATGAAGCTAAAGCAATGC |
18 | 12 | VIC | 58 | 152–182 |
BM1818 | AGCTGGGAATATAACCAAAGG AGTGCTTTCAAGGTCCATGC |
20 | 7 | VIC | 50 | 200–284 |
OarFCB304 | CCCTAGGAGCTTTCAATAAAGAATCGG CGCTGCTGTCAACTGGGTCAGGG |
22 | 15 | VIC | 55 | 150–188 |
DRBP1 | ATGGTGCAGCAGCAAGGTGAGCA GGGACTCAGTCTCTCTATCTCTTTG |
23 | 16 | PET | 53 | 106–154 |
OarAE54 | TACTAAAGAAACATGCTCCCAC AGAAACATTTATTCTTATCCTCAGTG |
25 | 14 | 6FAM | 56 | 112–134 |
NED: Black fluorescent; 6FAM: Blue fluorescent; PET: Red fluorescent; VIC: Green fluorescent.