Table 1.

Mapping of Picea balfouriana RNA-seq library reads to the Picea abies reference genome database

Classification	ET Genotype1	NET Genotype 1	ET Genotype 2	NET Genotype 2	ET Genotype 3	NET Genotype 3
Raw reads	12,519,224	11,703,983	12,150,702	11,734,531	12,150,562	12,280,320
Base pairs	613,419,76	573,495,167	595,384,398	574,992,019	595,377,538	601,735,680
%	100.00	100.00	100.00	100.00	100.00	100.00
Mapped reads	5,713,055	5,044,017	5,590,502	4,359,900	5,519,889	5,456,021
%	45.63	43.10	46.01	37.15	45.43	44.43
Perfect match	3,923,702	3,401,759	3,865,351	2,947,585	3,870,249	3,674,461
%	31.34	29.06	31.81	25.12	31.85	29.92
<=2 bp mismatch	1,789,353	1,642,258	1,725,151	1,412,315	1,649,640	1,781,560
%	14.29	14.03	14.20	12.04	13.58	14.51
Unique match	5,374,869	47,721,812	5,262,180	4,081,332	5,214,938	5,117,424
%	42.93	40.34	43.31	34.78	42.92	41.67
Multi-position match	338,186	322,205	328,322	278,568	304,951	338,597
%	2.70	2.75	2.70	12.42	2.51	2.76
Unmapped reads	6,806,169	6,659,966	6,560,200	7,374,631	6,630,673	6,824,299
%	54.37	56.90	53.99	62.85	54.57	55.57

ET, embryogenic tissue; NET, non-embryogenic tissue.