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. 2014 Jul 4;15(1):553. doi: 10.1186/1471-2164-15-553

Table 1.

Mapping of Picea balfouriana RNA-seq library reads to the Picea abies reference genome database

Classification ET Genotype1 NET Genotype 1 ET Genotype 2 NET Genotype 2 ET Genotype 3 NET Genotype 3
Raw reads 12,519,224 11,703,983 12,150,702 11,734,531 12,150,562 12,280,320
Base pairs 613,419,76 573,495,167 595,384,398 574,992,019 595,377,538 601,735,680
% 100.00 100.00 100.00 100.00 100.00 100.00
Mapped reads 5,713,055 5,044,017 5,590,502 4,359,900 5,519,889 5,456,021
% 45.63 43.10 46.01 37.15 45.43 44.43
Perfect match 3,923,702 3,401,759 3,865,351 2,947,585 3,870,249 3,674,461
% 31.34 29.06 31.81 25.12 31.85 29.92
<=2 bp mismatch 1,789,353 1,642,258 1,725,151 1,412,315 1,649,640 1,781,560
% 14.29 14.03 14.20 12.04 13.58 14.51
Unique match 5,374,869 47,721,812 5,262,180 4,081,332 5,214,938 5,117,424
% 42.93 40.34 43.31 34.78 42.92 41.67
Multi-position match 338,186 322,205 328,322 278,568 304,951 338,597
% 2.70 2.75 2.70 12.42 2.51 2.76
Unmapped reads 6,806,169 6,659,966 6,560,200 7,374,631 6,630,673 6,824,299
% 54.37 56.90 53.99 62.85 54.57 55.57

ET, embryogenic tissue; NET, non-embryogenic tissue.