Table 2. SNPs that are significant at empirical threshold 5% with different analysis of allele frequencies in the six Yenisei populations.
| Gene | SNPa | #SNP linked | Methodsb | Mutationc |
|---|---|---|---|---|
| PoCCA1 | 570 | 2 | BEV, FST | Intron |
| 582 | 2 | FST | Intron | |
| 1016 | 2 | LR, BEV | Intron | |
| 2803 | 5 | LR | Intron | |
| 4113 | 1 | LR, BEV | NS: Ser/Leu | |
| PoFTL2 | 1567 | 1 | FST | Promoter |
| PoGI | F2_605 | 5 | BEV, FST | NS: His/Tyr (F4_138, F4_810) |
| F4_134 | 1 | BEV | NS: Gly/Arg | |
| F4_638 | 2 | LR, BEV, FST | NS: Phe/Leu | |
| F6_8 | 1 | BEV | Intron | |
| F6_39 | 1 | BEV | Intron | |
| F6_76 | 1 | FST | Intron | |
| PoMFTL1 | 273 | 1 | BEV, FST | Intron |
| 322 | 3 | LR, BEV | Intron | |
| 416 | 12 | LR, BEV | Intron | |
| 1487 | 1 | BEV | Intron | |
| 2888 | 1 | FST | Intron | |
| PoPHYN | 583 | 1 | FST | Intron |
| 2695 | 5 | LR | SYN (2478) | |
| PoPHYP | 562 | 1 | LR, BEV | SYN |
| 726 | 1 | LR, BEV | NS: Leu/Pro | |
| 802 | 1 | BEV | SYN | |
| PoPRR7 | 4758 | 1 | BEV | Syn |
| 5687 | 1 | BEV, FST | NS: Asn/Asp | |
| 6627 | 1 | BEV, FST | Intron | |
| 6656 | 1 | BEV, FST | Intron | |
| 6717 | 1 | LR, BEV | Intron |
a
Only the most significant outlier SNP in the LD group listed.
b
LR, linear regression empirical significance; FST, BayeScan empirical significance; BEV, Bayenv empirical significance;
c
Mutation type of the SNP: NS, nonsynonymous; SYN, synonymous; positions of all nonsynonymous SNPs linked to are also indicated in the parentheses.