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. 2014 May 1;197(3):839–849. doi: 10.1534/genetics.114.163279

Table 2. High- and medium-confidence protein hits identified via LC-MS following Rpb2 immunoprecipitation (IP) from 18-hr cell extracts.

Accession Pfam domains Protein identity Confidence level
Contig 19200.0.g86.t1_1 RNA_pol_Rpb2_5, RNA_pol_Rpb2_4, RNA_pol_Rpb2_7, RNA_pol_Rpb2_6, RNA_pol_Rpb2_1, RNA_pol_Rpb2_3 Rpb2-a High
Contig 22488.0.g2.t1_1
Contig 13381.0.g48.t1_1 DEAD, Helicase_C Ddx5-like
Contig 16219.0.g100.t1_0 GAS2
Contig 755.0.g44.t1_0 GAS2
Contig 8173.0.g79.t1_0 RNA_Pol_L, RNA_Pol_A_bac Rpb3
Contig 11442.0.g16.t1_0 2x RRM_1
Contig 1141.1.g1.t1_0 RNA_Pol_Rpb2_1, RNA_Pol_Rpb2_2, RNA_Pol_Rpb2_3, RNA_Pol_Rpb_4, RNA_Pol_Rpb2_5, RNA_Pol_Rpb2_6, RNA_Pol-Rpb2_7 Rpb2-b
Contig 21576.0.g108.t1_0 Glyco_transf_5, Glyco_transf_1 Glycosyl transferase
Contig 14597.0.g69.t1_0
Contig 10038.0.g32.t1_1
Contig 18098.0.g9.t1_1 RPAP_1N
Contig 21174.0.g65.t1_1
Contig 14451.0.g111.t1_1 ECH Enoyl-CoA hydratase/isomerase
Contig 15609.0.g93.t1_0 ATP_bind_1 GPN-loop GTPase like 1
Contig 21267.0.g52.t1_0 ATP_bind_1 GPN-loop GTPase like 2
Contig 20804.0.g29.t1_1
Contig 103.1.g85.t1_1 UN_NPL4, NPL4 Nuclear pore-associated protein
Contig 4686.0.g38.t1_0 RNA_Pol_N RNA polymerase I/II/III subunit
Contig 15685.0.g23.t1_1 Ribosomal_L37
Contig 9287.0.g107.t1_0 KOW Ribosomal protein L24
Contig 12508.0.g82.t1_0 Mdp2
Contig 22520.0.g95.t1_0 Ribosomal_L17 rpS11e
Contig 22526.0.g93.t1_0 Pkinase
Contig 13396.0.g39.t1_0 Ribosomal_L4 Ribosomal protein L4 Medium
Contig 21133.0.g40.t1_1
Contig 9049.0.g92.t1_1 Ribosomal_L27 Ribosomal protein L27
Contig 4562.0.g74.t1_1 Actin Actin
Contig 850.1.g11.t1_0 Ribosomal_S3Ae Ribosomal protein S3a
Contig 1642.0.g21.t1_0 Ribosomal_L22 Ribosomal protein L22
Contig 7058.0.g101.t1_1
Contig 12224.0.g3.t1_0 START
Contig 11798.0.g106.t1_0 RNA_Pol_L2 Rpb11
Contig 5219.0.1.g44.t1_0 Ribosomal_S13N, Ribosomal_S15 Ribosomal protein S13E/S15P
Contig 22158.0.g4.t1_0 Ribosomal_L14e Ribosomal L14
Contig 4552.0.g54.t1_1 Ribosomal_L6e Ribosomal L6
Contig 11869.0.g78.t1_0 Ribosomal_L11_N, Ribosomal_L11 Ribosomal protein L11
Contig 232.1.g122.t1_0 Img2
Contig 1499.0.g65.t1_0
Contig 15153.0.g102.t1_1 Ribosomal_L20 Ribosomal L2 protein
Contig 11390.0.g72.t1_0 Ribosomal_L11N, Ribosomal_L11 Ribosomal L12e
Contig 11050.0.g68.t1_0 Ribosomal_S19e Ribosomal S19
Contig 9812.0.g20.t1_0 Ribosomal_L1 Ribosomal protein
Contig 13946.0.g19.t1_0 MRP_L27 MRP-L27
Contig 20881.0.1.g63.t1_0
Contig 13339.0.g92.t1_0 PDEase_1 3′,5′-cyclic nucleotide phosphodiesterase family protein