TABLE 2.
AdnAB in Streptomyces and other actinomycete sequenced genomesa
| Species and strain | Locus tag for sequence |
|
|---|---|---|
| AdnA | AdnB | |
| Streptomyces avermitilis MA-4680 | SAV_3077 | SAV_3076 |
| Streptomyces bingchenggensis BCW-1 | SBI_04047 | SBI_04046 |
| Streptomyces cattleya NRRL 8057 (=DSM 46488) | SCAT_4044 | SCAT_4047 |
| Streptomyces coelicolor A3(2) | SCO5183 | SCO5184 |
| Streptomyces flavogriseus ATCC 33331 | Sfla_2108 | Sfla_2107 |
| Streptomyces griseus subsp. griseus NBRC 13350 | SGR_2342 | SGR_2341 |
| Streptomyces scabiei 87.22 | SCAB_30771 | SCAB_30761 |
| Streptomyces sp. SirexAA-E | SACTE_4413 | SACTE_4414 |
| Streptomyces violaceusniger Tu 4113 | Strvi_1501 | Strvi_1502 |
| Streptomyces clavuligerus ATCC 27064 | SCLAV_4047 | SCLAV_4048 |
| Streptomyces lividans TK24 | SLI_5469 | SLI_5470 |
| Streptomyces davawensis JMC 4913 | BN159_3205 | BN159_3204 |
| Streptomyces collinus Tu 365 | B446_24410 | B446_24415 |
| Streptomyces hygroscopicus subsp. Jinggangensis TL01 | SHJGH_6050 | SHJGH_6052 |
| Streptomyces hygroscopicus subsp. Jinggangensis 5008 | SHJG_6289 | SHJG_6291 |
| Streptomyces fulvissimus DSM 40593 | SFUL_4994 | SFUL_4995 |
| Streptomyces albus J1074 | XNR_1620 | XNR_1619 |
| Streptomyces sp. PAMC26508 | F750_4709 | F750_4710 |
| Streptomyces venezuelae ATCC 10712 | SVEN_4833 | SVEN_4835b |
| Streptomyces rapamycinicus NRRL 5491 | M271_51085c | M271_18000 |
| Saccharopolyspora erythrea NRRL2338 | SACE_1077 | SACE_1078 |
| Rhodococcus erythropolis PR4 | RER_22180 | RER_22190 |
| Frankia sp. CcI3 | Francci3_3800 | Francci3_3799 |
a
Threshold e-value, <10−20 for AdnA and <10−40 for AdnB.
b
The aa identity with AdnB starts in SVEN_4835 and ends in SVEN_4836 (including the nuclease motif). The multiple homopolymers present in this region may contain a sequence error resulting in the predicted frameshift. Thus, these two coding sequences may form a single one.
c
M271_51085 of S. venezuelae includes a stretch of undetermined nucleotides interrupting the AdnA homologue.