Table 2.
Genetic anchoring of TO1000 assembly to B. oleracea pseudochromosomes (C1 to C9)
| Pseudo-chromosome | Number of linked scaffolds | Number of base pairs anchored | Percentage of base pairs anchored | Number of anchored scaffolds | Number of base pairs (%) in pseudochromosomes |
|---|---|---|---|---|---|
| C1 |
154 |
44,537,578 |
9.1% |
106 |
43,754,388 (9.0) |
| C2 |
161 |
53,780,918 |
11.0% |
111 |
52,875,895 (10.8) |
| C3 |
142 |
65,831,836 |
13.5% |
102 |
64,974,595 (13.5) |
| C4 |
235 |
55,258,765 |
11.3% |
138 |
53,705,393 (11.0) |
| C5 |
141 |
48,366,635 |
9.9% |
99 |
46,892,785 (9.6) |
| C6 |
132 |
40,383,462 |
8.3% |
79 |
39,814,676 (8.1) |
| C7 |
129 |
49,639,853 |
10.2% |
64 |
48,360,397 (9.9) |
| C8 |
124 |
43,398,395 |
8.9% |
63 |
41,752,485 (8.5) |
| C9 |
192 |
56,144,286 |
11.5% |
121 |
54,667,868 (11.2) |
| Total | 1,410 | 457,341,728 | 93.6% | 883 | 446,798,482 (91.5) |
The total number of assembled bases was 488,535,107; the percentage genetically linked (RAD mapping) was 93.61%; the percentage anchored to pseudochromosomes was 91.46%.