Table 4:
PGIS Promoter VNTR Repeat Length and SNP Genotype and Allele Frequencies
| All PAH |
Unaffected Carriers |
Control Subjects |
||||
|---|---|---|---|---|---|---|
| Number | Frequency | Number | Frequency | Number | Frequency | |
| VNTR genotypes | ||||||
| 3/4 | 1 | 0.009 | 0 | 0.000 | 0 | 0.000 |
| 4/4 | 3 | 0.028 | 1 | 0.042 | 1 | 0.010 |
| 4/5 | 3 | 0.028 | 0 | 0.000 | 2 | 0.020 |
| 4/6 | 24 | 0.222 | 5 | 0.208 | 24 | 0.238 |
| 4/7 | 3 | 0.028 | 0 | 0.000 | 0 | 0.000 |
| 4/8 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 |
| 5/5 | 0 | 0.000 | 1 | 0.042 | 0 | 0.000 |
| 5/6 | 9 | 0.083 | 6 | 0.250 | 9 | 0.089 |
| 5/7 | 3 | 0.028 | 1 | 0.042 | 1 | 0.010 |
| 5/8 | 0 | 0.000 | 1 | 0.042 | 0 | 0.000 |
| 6/6 | 56 | 0.519 | 7 | 0.292 | 60 | 0.594 |
| 6/7 | 5 | 0.046 | 2 | 0.083 | 4 | 0.040 |
| 6/8 | 1 | 0.009 | 0 | 0.000 | 0 | 0.000 |
| 6/9 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 |
| Total | 108 | 1.000 | 24 | 1.000 | 101 | 1.000 |
| VNTR alleles | ||||||
| 3 | 1 | 0.005 | 0 | 0.000 | 0 | 0.000 |
| 4 | 37 | 0.171 | 7 | 0.146 | 28 | 0.139 |
| 5 | 15 | 0.069 | 10 | 0.208 | 33 | 0.163 |
| 6 | 151 | 0.699 | 27 | 0.563 | 136 | 0.673 |
| 7 | 11 | 0.051 | 3 | 0.063 | 5 | 0.025 |
| 8 | 1 | 0.005 | 1 | 0.021 | 0 | 0.000 |
| 9 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 |
| Total | 216 | 1.000 | 48 | 1.000 | 202 | 1.000 |
| SNP1 K22 genotypes | ||||||
| T/T | 28 | 0.259 | 6 | 0.250 | 38 | 0.376 |
| T/G | 53 | 0.491 | 10 | 0.417 | 44 | 0.436 |
| G/G | 27 | 0.250 | 8 | 0.333 | 19 | 0.188 |
| Total | 108 | 1.000 | 24 | 1.000 | 101 | 1.000 |
| SNP1 K22 alleles | ||||||
| T | 109 | 0.505 | 22 | 0.458 | 120 | 0.594 |
| G | 107 | 0.495 | 26 | 0.542 | 82 | 0.406 |
| Total | 216 | 1.000 | 48 | 1.000 | 202 | 1.000 |
| SNP3 Y185 genotypes | ||||||
| C/C | 45 | 0.417 | 12 | 0.500 | 37 | 0.366 |
| C/T | 50 | 0.463 | 9 | 0.375 | 37 | 0.366 |
| T/T | 13 | 0.120 | 3 | 0.125 | 27 | 0.267 |
| Total | 108 | 1.000 | 24 | 1.000 | 101 | 1.000 |
| SNP3 Y185 alleles | ||||||
| C | 140 | 0.648 | 33 | 0.688 | 111 | 0.550 |
| T | 76 | 0.352 | 15 | 0.313 | 91 | 0.450 |
| Total | 216 | 1.000 | 48 | 1.000 | 202 | 1.000 |
| SNP4 C325A genotypes | ||||||
| C/C | 93 | 0.861 | 15 | 0.625 | 85 | 0.842 |
| C/A | 14 | 0.130 | 8 | 0.333 | 15 | 0.149 |
| A/A | 1 | 0.009 | 1 | 0.042 | 1 | 0.010 |
| Total | 108 | 1.000 | 24 | 1.000 | 101 | 1.000 |
| SNP4 C325A alleles | ||||||
| C | 200 | 0.926 | 38 | 0.792 | 185 | 0.916 |
| A | 16 | 0.074 | 10 | 0.208 | 17 | 0.084 |
| Total | 216 | 1.000 | 48 | 1.000 | 202 | 1.000 |
Definition of abbreviations: PAH = pulmonary arterial hypertension; PGIS = prostacyclin synthase; SNP = single-nucleotide polymorphism; VNTR = variable number of tandem repeats.