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. 2014 May 1;189(9):1110–1120. doi: 10.1164/rccm.201309-1697OC

Table 4:

PGIS Promoter VNTR Repeat Length and SNP Genotype and Allele Frequencies

  All PAH
Unaffected Carriers
Control Subjects
Number Frequency Number Frequency Number Frequency
VNTR genotypes            
 3/4 1 0.009 0 0.000 0 0.000
 4/4 3 0.028 1 0.042 1 0.010
 4/5 3 0.028 0 0.000 2 0.020
 4/6 24 0.222 5 0.208 24 0.238
 4/7 3 0.028 0 0.000 0 0.000
 4/8 0 0.000 0 0.000 0 0.000
 5/5 0 0.000 1 0.042 0 0.000
 5/6 9 0.083 6 0.250 9 0.089
 5/7 3 0.028 1 0.042 1 0.010
 5/8 0 0.000 1 0.042 0 0.000
 6/6 56 0.519 7 0.292 60 0.594
 6/7 5 0.046 2 0.083 4 0.040
 6/8 1 0.009 0 0.000 0 0.000
 6/9 0 0.000 0 0.000 0 0.000
 Total 108 1.000 24 1.000 101 1.000
VNTR alleles            
 3 1 0.005 0 0.000 0 0.000
 4 37 0.171 7 0.146 28 0.139
 5 15 0.069 10 0.208 33 0.163
 6 151 0.699 27 0.563 136 0.673
 7 11 0.051 3 0.063 5 0.025
 8 1 0.005 1 0.021 0 0.000
 9 0 0.000 0 0.000 0 0.000
 Total 216 1.000 48 1.000 202 1.000
SNP1 K22 genotypes            
 T/T 28 0.259 6 0.250 38 0.376
 T/G 53 0.491 10 0.417 44 0.436
 G/G 27 0.250 8 0.333 19 0.188
 Total 108 1.000 24 1.000 101 1.000
SNP1 K22 alleles            
 T 109 0.505 22 0.458 120 0.594
 G 107 0.495 26 0.542 82 0.406
 Total 216 1.000 48 1.000 202 1.000
SNP3 Y185 genotypes            
 C/C 45 0.417 12 0.500 37 0.366
 C/T 50 0.463 9 0.375 37 0.366
 T/T 13 0.120 3 0.125 27 0.267
 Total 108 1.000 24 1.000 101 1.000
SNP3 Y185 alleles            
 C 140 0.648 33 0.688 111 0.550
 T 76 0.352 15 0.313 91 0.450
 Total 216 1.000 48 1.000 202 1.000
SNP4 C325A genotypes            
 C/C 93 0.861 15 0.625 85 0.842
 C/A 14 0.130 8 0.333 15 0.149
 A/A 1 0.009 1 0.042 1 0.010
 Total 108 1.000 24 1.000 101 1.000
SNP4 C325A alleles            
 C 200 0.926 38 0.792 185 0.916
 A 16 0.074 10 0.208 17 0.084
 Total 216 1.000 48 1.000 202 1.000

Definition of abbreviations: PAH = pulmonary arterial hypertension; PGIS = prostacyclin synthase; SNP = single-nucleotide polymorphism; VNTR = variable number of tandem repeats.