Table 3.
Performance of Oli , OliMo , OliMoSS , RNAcontext and both RPISeq methods on PUM2+ in combination with two different negative datasets
| Pos. data | Neg.data | Value | Oli | OliMo | OliMoSS | RNAcontext | RPISeq-SVM | RPISeq-RF |
|---|---|---|---|---|---|---|---|---|
|
PUM2+ |
PUM2- |
AUC |
0.77 |
0.77 |
0.74 |
0.75 |
0.73 |
0.52 |
| |
|
Prec |
0.73 |
0.73 |
0.69 |
0.59 |
0.48 |
0.42 |
|
PUM2+ |
3K- |
AUC |
0.84 |
0.84 |
0.82 |
0.83 |
0.77 |
0.56 |
| Prec | 0.80 | 0.80 | 0.74 | 0.68 | 0.47 | 0.40 |
The table shows the performance for each method on two different datasets: one with PUM2+ and experimental negatives PUM2- and one with PUM2+ and randomly selected 3’-UTRs 3K-. AUC and precision (Prec) values were calculated for a 10-fold cross validation.