Table 4.
Gene interactions between SNPs in different folate pathway genes‡
| A. NHW | ||||
|---|---|---|---|---|
| Gene A | Marker A | Gene B | Marker B | P-value |
| BHMT | rs567754 | TYMS | rs495139 | 0.006 |
| BHMT2 | rs476620 | BHMT | rs585800 | 0.005 |
| BHMT2 | rs2253262 | CBS | rs2851391 | 0.010 |
| FOLR1 | rs11235462 | CBS | rs1801181 | 0.008 |
| FOLR1 | rs1540087 | CBS | rs234783 | 0.009 |
| FOLR1 | rs11235462 | MTHFD1 | rs2236224 | 0.008 |
| FOLR1 | rs1540087 | MTHFS | rs2586179 | 0.0004 |
| FOLR1 | rs1540087 | SLC19A1 | rs4819130 | 0.007 |
| FOLR2 | rs2298444 | CBS | rs234714 | 0.001 |
| FOLR2 | rs2276048 | CBS | rs234714 | 0.007 |
| FOLR2 | rs2298444 | MTHFS | rs2115540 | 0.007 |
| MTHFD1 | rs1256142 | CBS | rs12329790 | 0.005 |
| MTHFD1 | rs2236224 | CBS | rs12329790 | 0.009 |
| MTHFD1 | rs34616731 | SLC19A1 | rs3788205 | 0.001 |
| MTHFD1 | rs1256146 | SLC19A1 | rs3788205 | 0.007 |
| MTHFD2 | rs7587117 | MTHFS | rs2586179 | 0.002 |
| MTHFD2 | rs7587117 | MTHFS | rs2562744 | 0.002 |
| MTHFD2 | rs7571842 | MTHFS | rs2562744 | 0.003 |
| MTHFD2 | rs7571842 | MTHFS | rs2586179 | 0.004 |
| MTHFD2 | rs7587117 | MTRR | rs162029 | 0.006 |
| MTHFD2 | rs828858 | MTRR | rs162029 | 0.010 |
| MTHFR | rs1889292 | SLC19A1 | rs1051266 | 0.003 |
| MTHFR | rs1889292 | SLC19A1 | rs3788205 | 0.009 |
| MTHFR | rs1476413 | SLC19A1 | rs4819130 | 0.009 |
| MTHFS | rs2586179 | TYMS | rs2853741 | 0.007 |
| MTRR | rs2303080 | MTHFD1 | rs34616731 | 0.002 |
| MTRR | rs2303080 | MTHFD1 | rs1256146 | 0.009 |
| NOS3 | rs1800779 | CBS | rs1051319 | 0.003 |
| NOS3 | rs1800779 | FOLR2 | rs2276048 | 0.007 |
| NOS3 | rs2373929 | MTHFD1 | rs1076991 | 0.002 |
| NOS3 | rs891512 | MTHFS | rs2586179 | 0.007 |
| NOS3 | rs1800779 | MTHFS | rs2562744 | 0.009 |
| B. Hispanic | ||||
|---|---|---|---|---|
| Gene A | Marker A | Gene B | Marker b | p-value |
| BHMT | rs645112 | MTHFD1 | rs1256146 | 0.010 |
| BHMT2 | rs626105 | CBS | rs1051319 | 0.008 |
| BHMT2 | rs476620 | CBS | rs1801181 | 0.010 |
| BHMT2 | rs2253262 | MTHFD1 | rs2236225 | 0.009 |
| BHMT2 | rs682985 | SLC19A1 | rs2297291 | 0.005 |
| BHMT2 | rs1422086 | SLC19A1 | rs2297291 | 0.009 |
| CBS | rs234783 | SLC19A1 | rs4819130 | 0.008 |
| CBS | rs2851391 | SLC19A1 | rs3788190 | 0.009 |
| MTHFD1 | rs2236222 | SLC19A1 | rs2297291 | 0.002 |
| MTHFD1 | rs1885031 | SLC19A1 | rs2297291 | 0.008 |
| MTHFD1 | rs1076991 | TYMS | rs502396 | 0.004 |
| MTHFD1 | rs1076991 | TYMS | rs2853532 | 0.010 |
| MTHFR | rs1889292 | BHMT2 | rs2253262 | 0.008 |
| MTHFR | rs4846052 | CBS | rs2851391 | 0.005 |
| MTHFR | rs3737964 | CBS | rs234784 | 0.009 |
| MTHFR | rs1476413 | FOLR1 | rs11235462 | 0.001 |
| MTHFR | rs3737964 | FOLR1 | rs11235462 | 0.004 |
| MTHFR | rs1889292 | FOLR2 | rs2276048 | 0.006 |
| MTHFR | rs1476413 | FOLR2 | rs2276048 | 0.010 |
| MTHFR | rs1476413 | SLC19A1 | rs10483080 | 0.006 |
| MTHFR | rs1801131 | SLC19A1 | rs10483080 | 0.009 |
| MTR | rs12354209 | MTHFD2 | rs7587117 | 0.001 |
| MTR | rs1770449 | MTHFD2 | rs7587117 | 0.003 |
| MTR | rs1266164 | MTHFD2 | rs7587117 | 0.004 |
| MTR | rs1806505 | MTHFD2 | rs7587117 | 0.005 |
| MTR | rs1266164 | MTHFD2 | rs828858 | 0.005 |
| MTR | rs6668344 | MTHFD2 | rs828858 | 0.007 |
| MTR | rs1770449 | MTHFD2 | rs828858 | 0.008 |
| MTR | rs4077829 | MTHFD2 | rs828858 | 0.009 |
| MTR | rs12354209 | MTHFD2 | rs828858 | 0.010 |
| MTRR | rs162029 | CBS | rs234783 | 0.003 |
| NOS3 | rs3918211 | CBS | rs1051319 | 0.007 |
| NOS3 | rs2373929 | SLC19A1 | rs12483377 | 0.010 |
| TYMS | rs1001761 | CBS | rs234785 | 0.008 |
only p-values ≤ 0.01 shown, NHW = nonHispanic white group